Workflow Type: Snakemake

Snakemake workflow: dna-seq-varlociraptor

Snakemake GitHub actions status DOI

A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, pedigree, populations) via the unified statistical model of Varlociraptor.


The usage of this workflow is described in the Snakemake Workflow Catalog.

If you use this workflow in a paper, don't forget to give credits to the authors by citing the URL of this (original) repository and its DOI (see above).

Version History

v5.2.0 (latest) Created 14th Dec 2023 at 08:17 by Johannes Köster

chore(master): release 5.2.0 (#277)

Co-authored-by: github-actions[bot] <41898282+github-actions[bot]>

Frozen v5.2.0 526c4ce

master @ ee973c6 (earliest) Created 14th Dec 2023 at 08:15 by Johannes Köster

perf: reorganize tests to first only do dry-runs and then run long and short tests in one runner each (#280)

Frozen master ee973c6
help Creators and Submitter
  • Felix Mölder
  • David Lähnemann
  • Johannes Köster

Views: 330

Created: 14th Dec 2023 at 08:15

help Attributions


Total size: 13.3 MB
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