Workflow Type: Snakemake

Purge dups

This snakemake pipeline is designed to be run using as input a contig-level genome and pacbio reads. This pipeline has been tested with snakemake v7.32.4. Raw long-read sequencing files and the input contig genome assembly must be given in the config.yaml file. To execute the workflow run:

snakemake --use-conda --cores N

Or configure the cluster.json and run using the ./run_cluster command

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Version 2 (latest) Created 16th Mar 2024 at 07:45 by Tom Brown

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Frozen Version-2 838f2cb

Version 1 (earliest) Created 16th Jun 2023 at 14:56 by Tom Brown

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Brown, T. (2024). Purge retained haplotypes using Purge-Dups. WorkflowHub. https://doi.org/10.48546/WORKFLOWHUB.WORKFLOW.506.2
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Created: 16th Jun 2023 at 14:56

Last updated: 16th Mar 2024 at 07:49

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