BRAIN - Biomedical Research on Adult Intracranial Neoplasms
OverviewThe adult neurooncology team of the Division of Neuropathology and Neurochemistry of the Medical University of Vienna.
Space: Independent Teams
SEEK ID: https://workflowhub.eu/projects/243
Public web page: https://neurologie.meduniwien.ac.at/en/our-departments/division-of-neuropathology-and-neurochemistry/
Organisms: No Organisms specified
WorkflowHub PALs: No PALs for this Team
Team created: 12th May 2024
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https://orcid.org/0000-0001-8875-7304
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Web page: Not specified
GBMatch_CNN
Work in progress... Predicting TS & risk from glioblastoma whole slide images
Reference
Upcoming paper: stay tuned...
Dependencies
python 3.7.7
randaugment by Khrystyna Faryna: https://github.com/tovaroe/pathology-he-auto-augment
tensorflow 2.1.0
scikit-survival 0.13.1
pandas 1.0.3
lifelines 0.25.0
Description
The pipeline implemented here predicts transcriptional subtypes and survival of glioblastoma patients based on H&E stained whole slide scans. Sample data is ...
