ParslRNA-Seq: an efficient and scalable RNAseq analysis workflow for studies of differentiated gene expression

Here we introduce a scientific workflow implementing several open-source software executed by Parsl parallel scripting language in an high-performance computing environment. We have applied the workflow to a single-cardiomyocyte RNA-seq data retrieved from Gene Expression Omnibus database. The workflow allows for the analysis (alignment, QC, sort and count reads, statistics generation) of raw RNA-seq data and seamless integration of differential expression results into a configurable script code.

Space: Independent Teams

SEEK ID: https://workflowhub.eu/projects/115

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Team created: 6th Dec 2022

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