tcga-data-nf
main @ b7cb7f8

Workflow Type: Nextflow
Work-in-progress

Workflow to download and prepare TCGA data.

The workflow divides the process of generating Gene Regulatory networks from TCGA cancer data in three steps:

  1. Downloading the raw data from GDC and saving the rds/tables needed later
  2. Preparing the data. This step includes filtering the data, normalizing it...
  3. Analysis of gene regulatory networks

Version History

main @ b7cb7f8 (earliest) Created 18th Feb 2025 at 20:38 by Viola Fanfani

Merge pull request #10 from katehoffshutta/main

updates to run test cases


Frozen main b7cb7f8
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Created: 18th Feb 2025 at 20:38

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Total size: 72.2 MB
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