Hiroshima workflow community
Web page: Not specified
Funding details: Related items
https://orcid.org/0000-0003-4413-0651
Hiroshima University, Graduate School of Integrated Sciences for life, Laboratory of Genome Informatics, Ph.D student GitHub: https://github.com/yonesora56
Toward data-driven genome breeding (digital breeding), we are developing data analysis infrastructure technology essential for genome editing, focusing on gene function analysis using bioinformatics called BioDX.
Space: Hiroshima workflow community
Public web page: https://bonohu.hiroshima-u.ac.jp/index_en.html
CWL4IncorporateTSSintoGXF
This workflow determines TSS based on the analysis of CAGE-seq data and incorporates TSS information and 5'UTR information calculated based on TSS information into the gene annotation file (gff/gtf). The R package, TSSr, is used to determine TSS.
Requirements
Install using pip
pip install cwltool
Install using conda
conda create -n cwltool
conda activate
...
plant2human workflow
