Australian BioCommons
OverviewSpace: Independent Teams
SEEK ID: https://workflowhub.eu/projects/30
Public web page: https://www.biocommons.org.au/
Organisms: No Organisms specified
WorkflowHub PALs: No PALs for this Team
Team created: 16th Feb 2021
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Teams: Australian BioCommons
Organizations: Australian BioCommons
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Organizations: Pawsey Supercomputing Centre
https://orcid.org/0000-0002-7429-1846
Teams: Australian BioCommons
Organizations: University of Melbourne
Teams: Australian BioCommons
Organizations: University of Sydney
https://orcid.org/0000-0003-2488-953X
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Organizations: University of Sydney
https://orcid.org/0000-0003-0419-1476
A space managed by WorkflowHub administrators for teams that don't want/need to manage their own space.
Teams: IBISBA Workflows, NMR Workflow, UNLOCK, NanoGalaxy, Galaxy Climate, PNDB, IMBforge, COVID-19 PubSeq: Public SARS-CoV-2 Sequence Resource, LBI-RUD, Nick-test-team, usegalaxy-eu, Italy-Covid-data-Portal, UX trial team, Integrated and Urban Plant Pathology Laboratory, SARS-CoV-2 Data Hubs, lmjxteam2, Australian BioCommons, virAnnot pipeline, Ay Lab, iPC: individualizedPaediatricCure
Web page: Not specified
A porting of the Trinity RNA assembly pipeline, https://trinityrnaseq.github.io, that uses Nextflow to handle the underlying sub-tasks.
This enables additional capabilities to better use HPC resources, such as packing of tasks to fill up nodes and use of node-local disks to improve I/O.
By design, the pipeline separates the workflow logic (main file) and the cluster-specific configuration (config files), improving portability.
Based on a pipeline by Sydney Informatics Hub:
...
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