Workflow Type: Nextflow

A porting of the Trinity RNA assembly pipeline,, that uses Nextflow to handle the underlying sub-tasks. This enables additional capabilities to better use HPC resources, such as packing of tasks to fill up nodes and use of node-local disks to improve I/O. By design, the pipeline separates the workflow logic (main file) and the cluster-specific configuration (config files), improving portability.

Based on a pipeline by Sydney Informatics Hub:

Version History

Version 2 (latest) Created 26th Mar 2021 at 12:58 by Marco De La Pierre

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Version 1 (earliest) Created 17th Mar 2021 at 03:01 by Marco De La Pierre

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Views: 4863   Downloads: 258

Created: 17th Mar 2021 at 03:01

Last updated: 26th Mar 2021 at 12:58

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