Workflow Type: Nextflow
Stable

A porting of the Trinity RNA assembly pipeline, https://trinityrnaseq.github.io, that uses Nextflow to handle the underlying sub-tasks. This enables additional capabilities to better use HPC resources, such as packing of tasks to fill up nodes and use of node-local disks to improve I/O. By design, the pipeline separates the workflow logic (main file) and the cluster-specific configuration (config files), improving portability.

Based on a pipeline by Sydney Informatics Hub: https://github.com/Sydney-Informatics-Hub/SIH-Raijin-Trinity

Version History

Version 2 (latest) Created 26th Mar 2021 at 12:58 by Marco De La Pierre

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Open master e56e597

Version 1 (earliest) Created 17th Mar 2021 at 03:01 by Marco De La Pierre

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Frozen master 4ab3975
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Views: 3107   Downloads: 37

Created: 17th Mar 2021 at 03:01

Last updated: 26th Mar 2021 at 12:58

Last used: 7th Oct 2022 at 16:50

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Total size: 8.18 KB
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