Trinity @ NCI-Gadi
Version 1

Workflow Type: Shell Script

Description: Trinity @ NCI-Gadi contains a staged Trinity workflow that can be run on the National Computational Infrastructure’s (NCI) Gadi supercomputer. Trinity performs de novo transcriptome assembly of RNA-seq data by combining three independent software modules Inchworm, Chrysalis and Butterfly to process RNA-seq reads. The algorithm can detect isoforms, handle paired-end reads, multiple insert sizes and strandedness.

Infrastructure_deployment_metadata: Gadi (NCI)

Version History

Version 1 (earliest) Created 17th Aug 2021 at 05:44 by Tracy Chew

Added/updated 2 files

Open master af40e72
help Creators and Submitter
Additional credit

Matthew Downton, Andrey Bliznyuk, Rika Kobayashi, Ben Menadue, Ben Evans

Sadsad, R., Samaha, G., & Chew, T. (2021). Trinity @ NCI-Gadi. WorkflowHub.

Views: 1161   Downloads: 18

Created: 17th Aug 2021 at 05:44

Last updated: 7th Sep 2021 at 07:20

Last used: 7th Oct 2022 at 14:33

help Attributions


Total size: 61.5 KB
Powered by
Copyright © 2008 - 2022 The University of Manchester and HITS gGmbH

By continuing to use this site you agree to the use of cookies