Flashlite-Trinity
Version 1

Workflow Type: Shell Script
Stable

Flashlite-Trinity contains two workflows that run Trinity on the University of Queensland's HPC, Flashlite. Trinity performs de novo transcriptome assembly of RNA-seq data by combining three independent software modules Inchworm, Chrysalis and Butterfly to process RNA-seq reads. The algorithm can detect isoforms, handle paired-end reads, multiple insert sizes and strandedness. Users can run Flashlite-Trinity on single samples, or smaller samples requiring <500Gb of memory or staged Trinity which is recommended for global assemblies with multiple sample inputs. Both implementations make use of Singularity containers to install software.

Infrastructure_deployment_metadata: FlashLite (QRISCloud)

help Creators and Submitter
Creators
Submitter
Citation
Sadsad, R., Samaha, G., & Chew, T. (2021). Flashlite-Trinity. WorkflowHub. https://doi.org/10.48546/WORKFLOWHUB.WORKFLOW.149.1
Activity

Views: 247   Downloads: 2

Created: 18th Aug 2021 at 00:17

Last updated: 7th Sep 2021 at 07:27

Last used: 26th Sep 2021 at 11:10

help Attributions

None

Version History

Version 1 Created 18th Aug 2021 at 00:17 by Tracy Chew

No revision comments

Related items

Powered by
(v.1.12.0-master)
Copyright © 2008 - 2021 The University of Manchester and HITS gGmbH