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Workflow Type: Shell Script

Flashlite-Trinity contains two workflows that run Trinity on the University of Queensland's HPC, Flashlite. Trinity performs de novo transcriptome assembly of RNA-seq data by combining three independent software modules Inchworm, Chrysalis and Butterfly to process RNA-seq reads. The algorithm can detect isoforms, handle paired-end reads, multiple insert sizes and strandedness. Users can run Flashlite-Trinity on single samples, or smaller samples requiring <500Gb of memory or staged Trinity which is recommended for global assemblies with multiple sample inputs. Both implementations make use of Singularity containers to install software.

Infrastructure_deployment_metadata: FlashLite (QRISCloud)

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Version 1 (earliest) Created 18th Aug 2021 at 00:17 by Tracy Chew

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Cali Willet

Sadsad, R., Samaha, G., & Chew, T. (2021). Flashlite-Trinity. WorkflowHub. https://doi.org/10.48546/WORKFLOWHUB.WORKFLOW.149.1

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Created: 18th Aug 2021 at 00:17

Last updated: 7th Sep 2021 at 07:27

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