johan Rollin
SEEK ID: https://workflowhub.eu/people/96
Location:
Belgium
Expertise: Not specified
Tools: Not specified
ORCID: Not specified
Team roles
Project administrator
Their tagsRelated items
A space managed by WorkflowHub administrators for teams that don't want/need to manage their own space.
Teams: IBISBA Workflows, NMR Workflow, UNLOCK, NanoGalaxy, Galaxy Climate, PNDB, IMBforge, COVID-19 PubSeq: Public SARS-CoV-2 Sequence Resource, LBI-RUD, Nick-test-team, usegalaxy-eu, Italy-Covid-data-Portal, UX trial team, Integrated and Urban Plant Pathology Laboratory, SARS-CoV-2 Data Hubs, lmjxteam2, Australian BioCommons, virAnnot pipeline
Web page: Not specified
Les recherches et enseignements développés par le Laboratoire de Phytopathologie Intégrée et Urbaine visent à améliorer la protection des plantes contre les maladies provoquées par les agents pathogènes et à développer de nouveaux modes de production agricole en milieu urbain. Le laboratoire contribue ainsi à répondre aux défis écologiques, environnementaux, climatiques et sociétaux de l’agriculture de demain.
Space: Independent Teams
Public web page: https://www.gembloux.ulg.ac.be/phytopathologie/
Country: Belgium
City: Gembloux
Web page: https://www.gembloux.uliege.be/cms/c_4039827/en/gembloux-agro-bio-tech
Download all genome from https://www.ncbi.nlm.nih.gov/labs/virus/vssi/#/virus?SeqType_s=Nucleotide
with filter host:viridiplantae and Refseq on.
Creator: johan Rollin
Submitter: johan Rollin
Download
Creator: johan Rollin
Submitter: johan Rollin
Stable
Just the cleaning then assembly of all reads. TO explore further follow one of the paths described in "Global view" (WF 0)
Stable
Mapping against all plant virus then make contig out of the mapped reads then blast them.
Stable
Metagenomic dataset taxonomic classification using kraken2
Work-in-progress
Non-functional workflow to get a global view of possibilities for plant virus classification.
