This ARDC and BioCommons sponsored project delivers a key component of BioCommon’s vision for an ecosystem of platforms providing researchers with sophisticated data analysis and digital asset stewardship capabilities. The Bring Your Own Data (BYOD) Platform (https://www.biocommons.org.au/byod-expansion) has enabled highly accessible, highly available, highly scalable analysis and data sharing capabilities for the benefit of life science researchers nationally.
This WorkflowHub collection comprises workflow outputs from core workflow activities of the BYOD project.
Have you used any of the workflows in this collection?
- Please cite the workflows appropriately: according to guidelines provided by the workflow creators.
- Please acknowledge the BYOD project as follows: This work is supported by the Australian BioCommons via funding from Bioplatforms Australia, the Australian Research Data Commons (https://doi.org/10.47486/PL105) and the Queensland Government RICF programme. Bioplatforms Australia and the Australian Research Data Commons are funded by the National Collaborative Research Infrastructure Strategy (NCRIS).
SEEK ID: https://workflowhub.eu/collections/6
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Genome assessment post assembly v1.1
- Added about 1 year ago -
BAM to FASTQ + QC v1.0
- Added about 1 year ago -
Purge duplicates from hifiasm assembly v1.0
- Added about 1 year ago -
PacBio HiFi genome assembly using hifiasm v2.1
- Added about 1 year ago -
Fastq-to-bam @ NCI-Gadi
- Added 10 months ago -
RNASeq-DE @ NCI-Gadi
- Added 10 months ago -
Partial ref-guided workflow - gstacks and pops
- Added 10 months ago -
Partial ref-guided workflow - bwa mem only
- Added 10 months ago -
Partial de novo workflow: c-s-g-pops only
- Added 10 months ago -
Partial de novo workflow: ustacks only
- Added 10 months ago -
Stacks RAD-seq de novo workflow
- Added 10 months ago -
Stacks RAD-seq reference-guided workflow
- Added 10 months ago -
QC of RADseq reads
- Added 10 months ago -
GermlineShortV_biovalidation
- Added 10 months ago -
Shotgun-Metagenomics-Analysis
- Added 10 months ago -
Janis Germline Variant-Calling Workflow (GATK)
- Added 10 months ago -
Combined workflows for large genome assembly
- Added 10 months ago -
16S_biodiversity_for_nonoverlap_paired_end
- Added 10 months ago -
16S_biodiversity_for_overlap_paired_end
- Added 10 months ago -
Assess genome quality
- Added 10 months ago -
Racon polish with long reads, x4
- Added 10 months ago -
Assembly with Flye
- Added 10 months ago -
Trim and filter reads - fastp
- Added 10 months ago -
kmer counting - meryl
- Added 10 months ago -
Data QC
- Added 10 months ago -
Racon polish with Illumina reads, x2
- Added 10 months ago -
Assembly polishing
- Added 10 months ago -
Germline-ShortV @ NCI-Gadi
- Added 10 months ago -
Somatic-ShortV @ NCI-Gadi
- Added 10 months ago -
Flashlite-Supernova
- Added 10 months ago -
Flashlite-Trinity
- Added 10 months ago -
Flashlite-Juicer
- Added 10 months ago -
Bootstrapping-for-BQSR @ NCI-Gadi
- Added 10 months ago -
Trinity @ NCI-Gadi
- Added 10 months ago -
microPIPE: a pipeline for high-quality bacterial genome construction using ONT and Illumina sequencing
- Added 10 months ago -
GATK4 Fastq to joint-called cohort VCF with Cromwell on SLURM
- Added 10 months ago -
GATK4 Fastq to joint-called cohort VCF with Cromwell on local cluster (no job scheduler)
- Added 10 months ago -
16S_biodiversity_BIOM
- Added 10 months ago -
Trinity RNA Assembly
- Added 10 months ago

Creators
Submitter
Views: 381
Created: 1st Dec 2022 at 01:26
Last updated: 14th Feb 2023 at 23:14

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