This ARDC and BioCommons sponsored project delivers a key component of BioCommon’s vision for an ecosystem of platforms providing researchers with sophisticated data analysis and digital asset stewardship capabilities. The Bring Your Own Data (BYOD) Platform (https://www.biocommons.org.au/byod-expansion) has enabled highly accessible, highly available, highly scalable analysis and data sharing capabilities for the benefit of life science researchers nationally.
This WorkflowHub collection comprises workflow outputs from core workflow activities of the BYOD project.
Have you used any of the workflows in this collection?
- Please cite the workflows appropriately: according to guidelines provided by the workflow creators.
- Please acknowledge the BYOD project as follows: This work is supported by the Australian BioCommons via funding from Bioplatforms Australia, the Australian Research Data Commons (https://doi.org/10.47486/PL105) and the Queensland Government RICF programme. Bioplatforms Australia and the Australian Research Data Commons are funded by the National Collaborative Research Infrastructure Strategy (NCRIS).
SEEK ID: https://workflowhub.eu/collections/6
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Genome assessment post assembly v1.1
- Added 6 months ago -
BAM to FASTQ + QC v1.0
- Added 6 months ago -
Purge duplicates from hifiasm assembly v1.0
- Added 6 months ago -
PacBio HiFi genome assembly using hifiasm v2.1
- Added 6 months ago -
Fastq-to-bam @ NCI-Gadi
- Added 3 months ago -
RNASeq-DE @ NCI-Gadi
- Added 3 months ago -
Partial ref-guided workflow - gstacks and pops
- Added 3 months ago -
Partial ref-guided workflow - bwa mem only
- Added 3 months ago -
Partial de novo workflow: c-s-g-pops only
- Added 3 months ago -
Partial de novo workflow: ustacks only
- Added 3 months ago -
Stacks RAD-seq de novo workflow
- Added 3 months ago -
Stacks RAD-seq reference-guided workflow
- Added 3 months ago -
QC of RADseq reads
- Added 3 months ago -
GermlineShortV_biovalidation
- Added 3 months ago -
Shotgun-Metagenomics-Analysis
- Added 3 months ago -
Janis Germline Variant-Calling Workflow (GATK)
- Added 3 months ago -
Combined workflows for large genome assembly
- Added 3 months ago -
16S_biodiversity_for_nonoverlap_paired_end
- Added 3 months ago -
16S_biodiversity_for_overlap_paired_end
- Added 3 months ago -
Assess genome quality
- Added 3 months ago -
Racon polish with long reads, x4
- Added 3 months ago -
Assembly with Flye
- Added 3 months ago -
Trim and filter reads - fastp
- Added 3 months ago -
kmer counting - meryl
- Added 3 months ago -
Data QC
- Added 3 months ago -
Racon polish with Illumina reads, x2
- Added 3 months ago -
Assembly polishing
- Added 3 months ago -
Germline-ShortV @ NCI-Gadi
- Added 3 months ago -
Somatic-ShortV @ NCI-Gadi
- Added 3 months ago -
Flashlite-Supernova
- Added 3 months ago -
Flashlite-Trinity
- Added 3 months ago -
Flashlite-Juicer
- Added 3 months ago -
Bootstrapping-for-BQSR @ NCI-Gadi
- Added 3 months ago -
Trinity @ NCI-Gadi
- Added 3 months ago -
microPIPE: a pipeline for high-quality bacterial genome construction using ONT and Illumina sequencing
- Added 3 months ago -
GATK4 Fastq to joint-called cohort VCF with Cromwell on SLURM
- Added 3 months ago -
GATK4 Fastq to joint-called cohort VCF with Cromwell on local cluster (no job scheduler)
- Added 3 months ago -
16S_biodiversity_BIOM
- Added 3 months ago -
Trinity RNA Assembly
- Added 3 months ago

Creators
Submitter
Views: 223
Created: 1st Dec 2022 at 01:26
Last updated: 14th Feb 2023 at 23:14

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