Fastq-to-bam @ NCI-Gadi Version 1
View on GitHub
Download RO-CrateFastq-to-BAM @ NCI-Gadi is a genome alignment workflow that takes raw FASTQ files, aligns them to a reference genome and outputs analysis ready BAM files. This workflow is designed for the National Computational Infrastructure's (NCI) Gadi supercompter, leveraging multiple nodes on NCI Gadi to run all stages of the workflow in parallel, either massively parallel using the scatter-gather approach or parallel by sample. It consists of a number of stages and follows the BROAD Institute's best practice recommendations.
Infrastructure_deployment_metadata: Gadi (NCI)
Version History
Version 1 (earliest) Created 17th Aug 2021 at 05:45 by Georgina Samaha
Added/updated 2 files
Open
master4f6659f
Creators and SubmitterCreators
Additional credit
Andrey Bliznyuk, Ben Menadue, Rika Kobayashi, Matthew Downton, Yue Sun
Submitter
Views: 4331 Downloads: 344
Created: 17th Aug 2021 at 05:45
Last updated: 31st Sep 2022 at 00:23
AttributionsNone
Collections
BioCommons ‘Bring Y...
Related items
Teams: Sydney Informatics Hub
Organizations: The University of Sydney
Teams: Sydney Informatics Hub
Organizations: Australian BioCommons, The University of Sydney
https://orcid.org/0000-0003-2488-953X
Teams: Sydney Informatics Hub
Organizations: Australian BioCommons
https://orcid.org/0000-0003-0419-1476
Teams: Sydney Informatics Hub
Organizations: The University of Sydney
https://orcid.org/0000-0001-8449-1502
The Australian BioCommons enhances digital life science research through world class collaborative distributed infrastructure. It aims to ensure that Australian life science research remains globally competitive, through sustained strategic leadership, research community engagement, digital service provision, training and support.
Teams: Australian BioCommons, QCIF Bioinformatics, Pawsey Supercomputing Research Centre, Sydney Informatics Hub, Janis, Melbourne Data Analytics Platform (MDAP), Galaxy Australia
Web page: https://www.biocommons.org.au/
The Australian BioCommons enhances digital life science research through world class collaborative distributed infrastructure. It aims to ensure that Australian life science research remains globally competitive, through sustained strategic leadership, research community engagement, digital service provision, training and support.
Space: Australian BioCommons
Public web page: https://www.biocommons.org.au/
The Sydney Informatics Hub is a Core Research Facility of The University of Sydney. We work towards enabling excellence in data and compute intensive research. We provide support, training, and expertise in statistics, data science, artificial intelligence, bioinformatics, software engineering, simulation, visualisation, and research computing. We are creating reusable workflows for bioinformatics on Australia's national supercompute resources & commercial cloud, as an official node of the ...
Space: Australian BioCommons
Public web page: https://www.sydney.edu.au/sydney-informatics-hub
This ARDC and BioCommons sponsored project delivers a key component of BioCommon’s vision for an ecosystem of platforms providing researchers with sophisticated data analysis and digital asset stewardship capabilities. The Bring Your Own Data (BYOD) Platform (https://www.biocommons.org.au/byod-expansion) has enabled highly accessible, highly available, highly scalable analysis and data sharing capabilities for the benefit of life science researchers nationally.
**This WorkflowHub collection ...
