Fastq-to-bam @ NCI-Gadi
Version 1

Workflow Type: Shell Script
Work-in-progress

Fastq-to-BAM @ NCI-Gadi is a genome alignment workflow that takes raw FASTQ files, aligns them to a reference genome and outputs analysis ready BAM files. This workflow is designed for the National Computational Infrastructure's (NCI) Gadi supercompter, leveraging multiple nodes on NCI Gadi to run all stages of the workflow in parallel, either massively parallel using the scatter-gather approach or parallel by sample. It consists of a number of stages and follows the BROAD Institute's best practice recommendations.

Infrastructure_deployment_metadata: Gadi (NCI)

Version History

Version 1 (earliest) Created 17th Aug 2021 at 05:45 by Georgina Samaha

Added/updated 2 files


Open master 4f6659f
help Creators and Submitter
Creators
Additional credit

Cali Willet, Andrey Bliznyuk, Ben Menadue

Submitter
Citation
Sadsad, R., Samaha, G., & Chew, T. (2021). Fastq-to-bam @ NCI-Gadi. WorkflowHub. https://doi.org/10.48546/WORKFLOWHUB.WORKFLOW.146.1
Activity

Views: 951   Downloads: 21

Created: 17th Aug 2021 at 05:45

Last updated: 9th Sep 2021 at 02:32

Last used: 28th Jun 2022 at 08:11

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Total size: 1.16 MB
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