Fastq-to-bam @ NCI-Gadi
Version 1

Workflow Type: Shell Script

Fastq-to-BAM @ NCI-Gadi is a genome alignment workflow that takes raw FASTQ files, aligns them to a reference genome and outputs analysis ready BAM files. This workflow is designed for the National Computational Infrastructure's (NCI) Gadi supercompter, leveraging multiple nodes on NCI Gadi to run all stages of the workflow in parallel, either massively parallel using the scatter-gather approach or parallel by sample. It consists of a number of stages and follows the BROAD Institute's best practice recommendations.

Infrastructure_deployment_metadata: Gadi (NCI)

Version History

Version 1 (earliest) Created 17th Aug 2021 at 05:45 by Georgina Samaha

Added/updated 2 files

Open master 4f6659f
help Creators and Submitter
Additional credit

Andrey Bliznyuk, Ben Menadue, Rika Kobayashi, Matthew Downton, Yue Sun

Sadsad, R., Samaha, G., & Chew, T. (2021). Fastq-to-bam @ NCI-Gadi. WorkflowHub.

Views: 1636   Downloads: 31

Created: 17th Aug 2021 at 05:45

Last updated: 31st Sep 2022 at 00:23

Last used: 29th Nov 2022 at 00:42

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Total size: 1.16 MB
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