16S_biodiversity_BIOM
Version 1

Workflow Type: Galaxy
Stable

This is a Galaxy workflow that uses to convert the16S BIOM file to table and figures. It is part of the metaDEGalaxy workflow MetaDEGalaxy: Galaxy workflow for differential abundance analysis of 16s metagenomic data.

Steps

ID Name Description
0 Convert BIOM toolshed.g2.bx.psu.edu/repos/iuc/biom_convert/biom_convert/2.1.5.0
1 BIOM metadata toolshed.g2.bx.psu.edu/repos/iuc/biom_add_metadata/biom_add_metadata/2.1.5.0
2 DESeq2 toolshed.g2.bx.psu.edu/repos/qfabrepo/metadegalaxy_phyloseq_deseq2/phyloseq_DESeq2/1.22.3
3 Phyloseq Richness toolshed.g2.bx.psu.edu/repos/qfabrepo/metadegalaxy_phyloseq_richness/phyloseq_richness/1.22.3.2
4 Phyloseq Abundance plot toolshed.g2.bx.psu.edu/repos/qfabrepo/metadegalaxy_phyloseq_abundance_factor/phyloseq_abundance/1.22.3.3
5 Phyloseq Abundance Taxonomy toolshed.g2.bx.psu.edu/repos/qfabrepo/metadegalaxy_phyloseq_abundance_taxonomy/phyloseq_taxonomy/1.22.3.3
6 Symmetric Plot toolshed.g2.bx.psu.edu/repos/qfabrepo/metadegalaxy_symmetric_plot/symmetricPlot/1.0.1
7 Phyloseq Network Plot toolshed.g2.bx.psu.edu/repos/qfabrepo/metadegalaxy_phyloseq_net/phyloseq_net/1.24.2

Outputs

ID Name Description Type
_anonymous_output_1 _anonymous_output_1 n/a
  • File
_anonymous_output_2 _anonymous_output_2 n/a
  • File
_anonymous_output_3 _anonymous_output_3 n/a
  • File
_anonymous_output_4 _anonymous_output_4 n/a
  • File
_anonymous_output_5 _anonymous_output_5 n/a
  • File

Version History

Version 1 (earliest) Created 11th Aug 2021 at 05:12 by Mike Thang

Added/updated 2 files


Open master d1c188c
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Views: 3199   Downloads: 96

Created: 11th Aug 2021 at 05:12

Last updated: 11th Aug 2021 at 05:12

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Total size: 119 KB
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