ELIXIR Training
OverviewA team that gathers the workflow and workflow-related training activities related to ELIXIR, run by ELIXIR or affiliated to ELIXIR; its Hub, Nodes, platforms and communities
Space: ELIXIR
SEEK ID: https://workflowhub.eu/projects/75
Public web page: https://elixir-europe.org
Organisms: No Organisms specified
WorkflowHub PALs: No PALs for this Team
Team created: 1st Dec 2021
TagsThis item has not yet been tagged.
Related items
Teams: ELIXIR Training, ELIXIR Tools platform
Organizations: VIB, ELIXIR Belgium
https://orcid.org/0000-0002-6675-3836
Teams: IBISBA Workflows, nf-core viralrecon, Testing, Defragmentation TS, EuroScienceGateway, ELIXIR Training
Organizations: The University of Manchester
Teams: ELIXIR Training
Organizations: The University of Manchester
https://orcid.org/0000-0002-4479-715X
Teams: IBISBA Workflows, GalaxyProject SARS-CoV-2, BioBB Building Blocks, Common Workflow Language (CWL) community, BioExcel Best Practice Guides, Specimen Data Refinery, FAIR Computational Workflows, Vertebrate Genomes Pipelines in Galaxy, TRE-FX, EuroScienceGateway, Biodiversity Genomics Europe (general), BY-COVID Baseline Use Case: SARS-CoV-2 Vaccine(s) effectiveness in preventing SARS-CoV-2 infection, BY-COVID (general), BioDT additional pipelines, BioDT Use Case 4.1.1.1 Biodiversity dynamics, BioDT Use Case 4.1.2.2 DNA detected biodiversity, poorly known habitats, BioDT Use Case 4.1.2.1 Crop wild relatives and genetic resources for food security, BioDT Use Case 4.1.3.1 Invasive species, BioDT Use Case 4.1.3.2 Endangered species, BioDT Use Case 4.1.4.1 Disease outbreaks, BioDT Use Case 4.1.4.2 Pollinators, BioDT Use Case 4.1.1.2 Ecosystem services, ELIXIR Training, ELIXIR Tools platform
Organizations: The University of Manchester, ELIXIR-UK
https://orcid.org/0000-0001-9842-9718
ELIXIR is an intergovernmental organisation that brings together life science resources from across Europe. These resources include databases, software tools, training materials, cloud storage and supercomputers.
The goal of ELIXIR is to coordinate these resources so that they form a single infrastructure. This infrastructure makes it easier for scientists to find and share data, exchange expertise, and agree on best practices. Ultimately, it will help them gain new insights into how living ...
Teams: ELIXIR Training, FAIR Computational Workflows, EuroScienceGateway, BY-COVID (general), ELIXIR Tools platform, ELIXIR Metabolomics
Web page: https://elixir-europe.org/
To make your workflow FAIR (Findable, Accessible, Interoperable, Reusable), register it in WorkflowHub, a workflow registry with rich metadata capture for workflow discovery and sharing, and value-added services, for workflow testing (LifeMonitor), execution and publication.
The EuroScienceGateway, Biodiversity Genomics Europe and BioDT projects will use WorkflowHub to organise, share and publish their workflows.
This was Ask Me Anything and Bring Your Own Workflow (AMA & BYOW) specifically ...
Creators: Nick Juty, Finn Bacall
Submitter: Stian Soiland-Reyes
External Link
Reproducibility is a cornerstone of good scientific practice. Thanks to funding provided by ELIXIR Training Platform Task 2, we have brought together the biggest names in bioinformatics workflow management for a 3 day practical workshop. We have presentations from the development teams of CWL, Snakemake, Nextflow, nf-core and more. If you want to learn more about the workflow management concepts that will be addressed in this workshop, check out these articles:
Workflow systems turn raw data into ...
Start Date: 29th Nov 2021
End Date: 1st Dec 2021
Event Website: https://elixir-workflow-workshop.github.io/2021/
Country: 
Germany
City: Virtual
Date: Friday 11 June 2021, 10.00 CEST
Chairs: Carole Goble, Stian Soiland-Reyes, Salvador Capella-Gutiérrez, José María Fernández González and Frederik Coppens
In Life Sciences, experimental laboratory procedures usually have a lifespan since their first inception, wide adoption along the years, and later being superseded by others. The same applies to the analysis of the generated experimental data. Workflow Lifecycle represents the different states of workflows during their “life”. This workshop ...
Start Date: 11th Jun 2021
End Date: 11th Jun 2021
Event Website: https://docs.google.com/document/d/1AOE9jLO5EbUFu9NTe0B-z_jx8eQGIMSySkMLRMYvXO0/edit#heading=h.podt37y5jukq
Country: Not specified
City: Virtual
