Bootstrapping-for-BQSR @ NCI-Gadi
Version 1

Workflow Type: Shell Script
Work-in-progress

Bootstrapping-for-BQSR @ NCI-Gadi is a pipeline for bootstrapping a variant resource to enable GATK base quality score recalibration (BQSR) for non-model organisms that lack a publicly available variant resource. This implementation is optimised for the National Compute Infrastucture's Gadi HPC. Multiple rounds of bootstrapping can be performed. Users can use Fastq-to-bam @ NCI-Gadi and Germline-ShortV @ NCI-Gadi to produce required input files for Bootstrapping-for-BQSR @ NCI-Gadi.

Infrastructure_deployment_metadata: Gadi (NCI)

Version History

Version 1 (earliest) Created 18th Aug 2021 at 00:26 by Tracy Chew

Added/updated 1 files


Open master a1dee06
help Creators and Submitter
Creators
Additional credit

Cali Willet

Submitter
Citation
Sadsad, R., & Chew, T. (2021). Bootstrapping-for-BQSR @ NCI-Gadi. WorkflowHub. https://doi.org/10.48546/WORKFLOWHUB.WORKFLOW.153.1
Activity

Views: 889   Downloads: 15

Created: 18th Aug 2021 at 00:26

Last updated: 7th Sep 2021 at 07:24

Last used: 25th Jun 2022 at 09:48

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Total size: 30.3 KB
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