Germline-ShortV @ NCI-Gadi
Version 1

Workflow Type: Shell Script

Germline-ShortV @ NCI-Gadi is an implementation of the BROAD Institute's best practice workflow for germline short variant discovery. This implementation is optimised for the National Compute Infrastucture's Gadi HPC, utilising scatter-gather parallelism to enable use of multiple nodes with high CPU or memory efficiency. This workflow requires sample BAM files, which can be generated using the Fastq-to-bam @ NCI-Gadi pipeline. Germline-ShortV can be applied to model and non-model organisms (including non-diploid organisms).

Infrastructure_deployment_metadata: Gadi (NCI)

help Creators and Submitter
Sadsad, R., Samaha, G., & Chew, T. (2021). Germline-ShortV @ NCI-Gadi. WorkflowHub.

Views: 295   Downloads: 7

Created: 17th Aug 2021 at 05:35

Last updated: 9th Sep 2021 at 02:34

Last used: 16th Oct 2021 at 13:26

help Attributions


Version History

Version 1 Created 17th Aug 2021 at 05:35 by Tracy Chew

No revision comments

Related items

Powered by
Copyright © 2008 - 2021 The University of Manchester and HITS gGmbH