Germline-ShortV @ NCI-Gadi is an implementation of the BROAD Institute's best practice workflow for germline short variant discovery. This implementation is optimised for the National Compute Infrastucture's Gadi HPC, utilising scatter-gather parallelism to enable use of multiple nodes with high CPU or memory efficiency. This workflow requires sample BAM files, which can be generated using the Fastq-to-bam @ NCI-Gadi pipeline. Germline-ShortV can be applied to model and non-model organisms (including non-diploid organisms).
Infrastructure_deployment_metadata: Gadi (NCI)
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Created: 17th Aug 2021 at 05:35
Last updated: 9th Sep 2021 at 02:34
Last used: 22nd Jan 2022 at 16:02