Genome assessment post assembly
Version 1

Workflow Type: Galaxy
Stable

Genome assessment post assembly

General usage recommendations

Please see the Genome assessment post assembly guide.

See change log

Attributions

The workflow & the doc_guidelines template used are supported by the Australian BioCommons via Bioplatforms Australia funding, the Australian Research Data Commons (https://doi.org/10.47486/PL105) and the Queensland Government RICF programme. Bioplatforms Australia and the Australian Research Data Commons are enabled by the National Collaborative Research Infrastructure Strategy (NCRIS).

Inputs

ID Name Description Type
FASTA contigs - Primary Assembly FASTA contigs - Primary Assembly n/a n/a

Steps

ID Name Description
0 FASTA contigs - Primary Assembly
1 Fasta Statistics toolshed.g2.bx.psu.edu/repos/iuc/fasta_stats/fasta-stats/2.0
2 Quast toolshed.g2.bx.psu.edu/repos/iuc/quast/quast/5.0.2+galaxy1
3 Meryl toolshed.g2.bx.psu.edu/repos/iuc/meryl/meryl/1.3+galaxy3
4 Busco toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.2.2+galaxy0
5 Merqury toolshed.g2.bx.psu.edu/repos/iuc/merqury/merqury/1.3

Outputs

ID Name Description Type
stats_output stats_output n/a
quast_tabular quast_tabular n/a
report_html report_html n/a
report_pdf report_pdf n/a
log log n/a
read_db read_db n/a
busco_table busco_table n/a
bed_files bed_files n/a
wig_files wig_files n/a
qv_files qv_files n/a
png_files png_files n/a
sizes_files sizes_files n/a
stats_files stats_files n/a

Version History

v1.0.0 (earliest) Created 7th Nov 2022 at 07:10 by Johan Gustafsson

Update links


Frozen v1.0.0 efaf002
help Creators and Submitter
Creator
Submitter
Citation
Price, G. (2022). Genome assessment post assembly. WorkflowHub. https://doi.org/10.48546/WORKFLOWHUB.WORKFLOW.403.1
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Created: 7th Nov 2022 at 07:10

Last used: 8th Dec 2022 at 17:31

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