Somatic-ShortV @ NCI-Gadi
Version 1

Workflow Type: Shell Script

Somatic-ShortV @ NCI-Gadi is a variant calling pipeline that calls somatic short variants (SNPs and indels) from tumour and matched normal BAM files following GATK's Best Practice Workflow. This workflow is designed for the National Computational Infrastructure's (NCI) Gadi supercompter, leveraging multiple nodes on NCI Gadi to run all stages of the workflow in parallel.

Infrastructure_deployment_metadata: Gadi (NCI)

help Creators and Submitter
Sadsad, R., & Chew, T. (2021). Somatic-ShortV @ NCI-Gadi. WorkflowHub.

Views: 256   Downloads: 3

Created: 18th Aug 2021 at 00:14

Last updated: 9th Sep 2021 at 02:33

Last used: 26th Sep 2021 at 11:13

help Attributions


Version History

Version 1 Created 18th Aug 2021 at 00:14 by Tracy Chew

No revision comments

Related items

Powered by
Copyright © 2008 - 2021 The University of Manchester and HITS gGmbH