Somatic-ShortV @ NCI-Gadi
Version 1

Workflow Type: Shell Script
Work-in-progress

Somatic-ShortV @ NCI-Gadi is a variant calling pipeline that calls somatic short variants (SNPs and indels) from tumour and matched normal BAM files following GATK's Best Practice Workflow. This workflow is designed for the National Computational Infrastructure's (NCI) Gadi supercompter, leveraging multiple nodes on NCI Gadi to run all stages of the workflow in parallel.

Infrastructure_deployment_metadata: Gadi (NCI)

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Citation
Sadsad, R., & Chew, T. (2021). Somatic-ShortV @ NCI-Gadi. WorkflowHub. https://doi.org/10.48546/WORKFLOWHUB.WORKFLOW.148.1
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Created: 18th Aug 2021 at 00:14

Last updated: 9th Sep 2021 at 02:33

Last used: 26th Sep 2021 at 11:13

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Version 1 Created 18th Aug 2021 at 00:14 by Tracy Chew

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