Somatic-ShortV @ NCI-Gadi
Version 1

Workflow Type: Shell Script

Somatic-ShortV @ NCI-Gadi is a variant calling pipeline that calls somatic short variants (SNPs and indels) from tumour and matched normal BAM files following GATK's Best Practice Workflow. This workflow is designed for the National Computational Infrastructure's (NCI) Gadi supercompter, leveraging multiple nodes on NCI Gadi to run all stages of the workflow in parallel.

Infrastructure_deployment_metadata: Gadi (NCI)

Version History

Version 1 (earliest) Created 18th Aug 2021 at 00:14 by Tracy Chew

Added/updated 2 files

Open master d3de80d
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Additional credit

Cali Willet

Sadsad, R., & Chew, T. (2021). Somatic-ShortV @ NCI-Gadi. WorkflowHub.

Views: 2882   Downloads: 196

Created: 18th Aug 2021 at 00:14

Last updated: 9th Sep 2021 at 02:33

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Total size: 261 KB
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