Somatic-ShortV @ NCI-Gadi
Version 1

Workflow Type: Shell Script
Work-in-progress

Somatic-ShortV @ NCI-Gadi is a variant calling pipeline that calls somatic short variants (SNPs and indels) from tumour and matched normal BAM files following GATK's Best Practice Workflow. This workflow is designed for the National Computational Infrastructure's (NCI) Gadi supercompter, leveraging multiple nodes on NCI Gadi to run all stages of the workflow in parallel.

Infrastructure_deployment_metadata: Gadi (NCI)

Version History

Version 1 (earliest) Created 18th Aug 2021 at 00:14 by Tracy Chew

Added/updated 2 files


Open master d3de80d
help Creators and Submitter
Creators
Additional credit

Cali Willet

Submitter
Citation
Sadsad, R., & Chew, T. (2021). Somatic-ShortV @ NCI-Gadi. WorkflowHub. https://doi.org/10.48546/WORKFLOWHUB.WORKFLOW.148.1
Activity

Views: 837   Downloads: 20

Created: 18th Aug 2021 at 00:14

Last updated: 9th Sep 2021 at 02:33

Last used: 25th Jun 2022 at 01:46

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Total size: 261 KB
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