3 items tagged with 'Classification'.
Stable
Workflow for Illumina Quality Control and Filtering
Multiple paired datasets will be merged into single paired dataset.
Summary:
- FastQC on raw data files
- fastp for read quality trimming
- BBduk for phiX and (optional) rRNA filtering
- Kraken2 for taxonomic classification of reads (optional)
- BBmap for (contamination) filtering using given references (optional)
- FastQC on filtered (merged) data
Other UNLOCK workflows on WorkflowHub: https://workflowhub.eu/projects/16/workflows?view=default ...
Created: 21st Apr 2022 at 14:00, Last updated: 7th Apr 2023 at 15:02
Views: 974, Downloads: 0
Workflow for quality assessment of paired reads and classification using NGTax 2.0 and functional annotation using picrust2. In addition files are exported to their respective subfolders for easier data management in a later stage. Steps:
- FastQC (read quality control)
- NGTax 2.0
- Picrust 2
- Export module for ngtax
Created: 30th Aug 2021 at 08:18, Last updated: 11th Oct 2021 at 13:50
Views: 1577, Downloads: 27
Stable
Variant Interpretation Pipeline (VIP) that annotates, filters and reports prioritized causal variants in humans, see https://github.com/molgenis/vip for more information.
Created: 21st Jun 2021 at 09:33, Last updated: 21st Jun 2021 at 09:36
Views: 1243, Downloads: 17