3 items tagged with 'nanopore'.
Created: 20th Feb 2023 at 15:48
Views: 133, Downloads: 0
Work-in-progress
Workflow for LongRead Quality Control and Filtering
- FastQC before filtering (read quality control)
- Filtlong (read trimming)
- Kraken2 taxonomic read classification
- Minimap2 read filtering based on given references
- FastQC after filtering (read quality control)
Other UNLOCK workflows on WorkflowHub: https://workflowhub.eu/projects/16/workflows?view=default
All tool CWL files and other workflows can be found here: Tools: https://gitlab.com/m-unlock/cwl Workflows: ...
Type: Common Workflow Language
Creators: Bart Nijsse, Jasper Koehorst, Germán Royval
Submitter: Bart Nijsse
Created: 21st Apr 2022 at 17:19, Last updated: 2nd Feb 2023 at 15:12
Views: 739, Downloads: 0
- Deprecated -
See our updated hybrid assembly workflow: https://workflowhub.eu/workflows/367
And other workflows: https://workflowhub.eu/projects/16#workflows
Workflow for sequencing with ONT Nanopore data, from basecalled reads to (meta)assembly and binning
- Workflow Nanopore Quality
- Kraken2 taxonomic classification of FASTQ reads
- Flye (de-novo assembly)
- Medaka (assembly polishing)
- metaQUAST (assembly quality reports)
When Illumina reads are provided:
- Workflow ...
Type: Common Workflow Language
Creators: Bart Nijsse, Jasper Koehorst, Germán Royval
Submitter: Jasper Koehorst
Created: 6th Jan 2022 at 07:38, Last updated: 2nd Feb 2023 at 15:16
Views: 1496, Downloads: 7