1 item tagged with 'filtering'.
Workflow for Illumina paired read quality control, trimming and filtering
Multiple paired datasets will be merged into single paired dataset.
- FastQC on raw data files
- fastp for read quality trimming
- BBduk for phiX and (optional) rRNA filtering
- Kraken2 for taxonomic classification of reads (optional)
- BBmap for (contamination) filtering using given references (optional)
- FastQC on filtered (merged) data
Other UNLOCK workflows on WorkflowHub: ...
Created: 21st Apr 2022 at 14:00, Last updated: 2nd Nov 2022 at 15:38