1 item tagged with 'filtering'.
Workflow for Illumina Quality Control and Filtering
Multiple paired datasets will be merged into single paired dataset.
- FastQC on raw data files
- fastp for read quality trimming
- BBduk for phiX and (optional) rRNA filtering
- Kraken2 for taxonomic classification of reads (optional)
- BBmap for (contamination) filtering using given references (optional)
- FastQC on filtered (merged) data
Other UNLOCK workflows on WorkflowHub: https://workflowhub.eu/projects/16/workflows?view=default ...
Created: 21st Apr 2022 at 14:00, Last updated: 7th Apr 2023 at 15:02
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