Workflow for Metagenomics from raw reads to annotated bins. Summary

• MetaBAT2 (binning)
• CheckM (bin completeness and contamination)
• GTDB-Tk (bin taxonomic classification)
• BUSCO (bin completeness)

All tool CWL files and other workflows can be found here: Tools: https://git.wur.nl/unlock/cwl/-/tree/master/cwl Workflows: https://git.wur.nl/unlock/cwl/-/tree/master/cwl/workflows

The dependencies are either accessible from https://unlock-icat.irods.surfsara.nl (anonymous,anonymous) and/or ...