1 item tagged with 'microbial'.
Work-in-progress
Workflow for Metagenomics from raw reads to annotated bins. Summary
- MetaBAT2 (binning)
- CheckM (bin completeness and contamination)
- GTDB-Tk (bin taxonomic classification)
- BUSCO (bin completeness)
All tool CWL files and other workflows can be found here: Tools: https://git.wur.nl/unlock/cwl/-/tree/master/cwl Workflows: https://git.wur.nl/unlock/cwl/-/tree/master/cwl/workflows
The dependencies are either accessible from https://unlock-icat.irods.surfsara.nl (anonymous,anonymous) and/or ...
Created: 15th Oct 2020 at 14:55, Last updated: 29th Apr 2022 at 09:45