Workflow Type: Common Workflow Language
Stable

Amplicon analysis workflow using NG-Tax

Steps:

  • Quality control on the reads
  • Execute NGTax for ASV detection and classification

For more information about NG-Tax 2.0 have a look at https://doi.org/10.3389/fgene.2019.01366

Inputs

ID Name Description Type
files file paths files to download string[]
destination IRODS final destination Final destination on iRODS string
forward_primer Forward primer Forward primer used string
reverse_primer Reverse primer Reverse primer used string
reference_db Reference database Reference database used in FASTA format string?
rev_read_len Reverse read length Read length of the reverse read int
for_read_len Reverse read length Read length of the reverse read int
sample Sample name Name of the sample being analysed string

Steps

ID Name Description
irods_download
fastqc
ngtax

Outputs

ID Name Description Type
fastqc_output n/a n/a Directory
ngtax_output n/a n/a Directory
help Creators and Submitter
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Views: 1905   Downloads: 54

Created: 23rd Jul 2020 at 10:59

Last updated: 8th Jun 2021 at 08:11

Last used: 16th Oct 2021 at 15:15

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Version History

Version 7 (latest) Created 28th Oct 2020 at 11:07 by Jasper Koehorst

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