Work-in-progress

Amplicon analysis workflow using NG-Tax

Inputs

ID Name Description Type
files file paths files to download string[]
destination IRODS final destination Final destination on iRODS string
forward_primer Forward primer Forward primer used string
reverse_primer Reverse primer Reverse primer used string
reference_db Reference database Reference database used in FASTA format string?
rev_read_len Reverse read length Read length of the reverse read int
for_read_len Reverse read length Read length of the reverse read int
sample Sample name Name of the sample being analysed string

Steps

ID Name Description
irods_download
fastqc
ngtax

Outputs

ID Name Description Type
fastqc_output n/a n/a Directory
ngtax_output n/a n/a Directory
help Creators and Submitter
Creators
Not specified
Submitter
Activity

Views: 220   Downloads: 16

Created: 23rd Jul 2020 at 10:59

Last updated: 15th Oct 2020 at 14:23

Last used: 21st Oct 2020 at 23:55

help Tags
help Attributions

None

Related items

Powered by
(v.1.11.master)
Copyright © 2008 - 2020 The University of Manchester and HITS gGmbH