2 items tagged with 'Amplicon'.
Workflow for quality assessment of paired reads and classification using NGTax 2.0 and functional annotation using picrust2. In addition files are exported to their respective subfolders for easier data management in a later stage. Steps:
- FastQC (read quality control)
- NGTax 2.0
- Picrust 2
- Export module for ngtax
Created: 30th Aug 2021 at 08:18, Last updated: 11th Oct 2021 at 13:50
Views: 1573, Downloads: 27
Stable
Amplicon analysis workflow using NG-Tax
Steps:
- Quality control on the reads
- Execute NGTax for ASV detection and classification
For more information about NG-Tax 2.0 have a look at https://doi.org/10.3389/fgene.2019.01366
Type: Common Workflow Language
Creators: Jasper Koehorst, Bart Nijsse, Jesse van Dam, Peter Schaap,
Submitter: Jasper Koehorst
Created: 23rd Jul 2020 at 10:59, Last updated: 8th Jun 2021 at 08:11
Views: 6466, Downloads: 66