Genomics - PE Variation
Version 1

Workflow Type: Galaxy

Analysis of variation within individual COVID-19 samples using Illumina Paired End data. More info can be found at https://covid19.galaxyproject.org/genomics/

Inputs

ID Name Description Type
GenBank file n/a n/a
  • File
Paired Collection (fastqsanger) n/a n/a
  • File

Steps

ID Name Description
10_Realign reads n/a n/a
11_MultiQC n/a n/a
12_Call variants n/a n/a
13_SnpEff eff n/a n/a
14_SnpSift Extract Fields n/a n/a
15_Collapse Collection n/a n/a
2_SnpEff build n/a n/a
3_fastp n/a n/a
4_Map with BWA-MEM n/a n/a
5_MultiQC n/a n/a
6_Filter SAM or BAM, output SAM or BAM n/a n/a
7_Samtools stats n/a n/a
8_MarkDuplicates n/a n/a
9_MultiQC n/a n/a
Total size: 56.5 KB
help Creators and Submitter
Creators
  • Dannon Baker
  • Marius van den Beek
  • Dave Bouvier
  • John Chilton
  • Nate Coraor
  • Frederik Coppens
  • Bert Droesbeke
  • Ignacio Eguinoa
  • Simon Gladman
  • Björn Grüning
  • Delphine Larivière
  • Gildas Le Corguillé
  • Andrew Lonie
  • Nicholas Keener
  • Sergei Kosakovsky Pond
  • Wolfgang Maier
  • Anton Nekrutenko
  • James Taylor
  • Steven Weaver
Submitter
License
Activity

Views: 769   Downloads: 39

Created: 10th Apr 2020 at 13:52

Last used: 19th Jan 2022 at 16:25

help Tags
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Version History

Version 1 (earliest) Created 10th Apr 2020 at 13:52 by Bert Droesbeke

Added/updated 3 files


Open master 1f96884

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