Genomics - MRCA analysis
Version 1

Workflow Type: Galaxy

Dating the most recent common ancestor (MRCA) of SARS-CoV-2. The workflow is used to extract full length sequences of SARS-CoV-2, tidy up their names in FASTA files, produce a multiple sequences alignment and compute a maximum likelihood tree. More info can be found at https://covid19.galaxyproject.org/genomics/

Inputs

ID Name Description Type
0_Input Dataset n/a n/a
  • File

Steps

ID Name Description
1_Remove beginning n/a n/a
2_Convert n/a n/a
3_Cut n/a n/a
4_NCBI Accession Download n/a n/a
5_NormalizeFasta n/a n/a
6_Text transformation n/a n/a
7_Collapse Collection n/a n/a
8_MAFFT n/a n/a
9_FASTTREE n/a n/a

Version History

Version 1 (earliest) Created 10th Apr 2020 at 13:44 by Bert Droesbeke

Added/updated 3 files


Open master 6bc6cef
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Creators
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Additional credit

Dannon Baker, Marius van den Beek, Dave Bouvier, John Chilton, Nate Coraor, Frederik Coppens, Bert Droesbeke, Ignacio Eguinoa, Simon Gladman, Björn Grüning, Delphine Larivière, Gildas Le Corguillé, Andrew Lonie, Nicholas Keener, Sergei Kosakovsky Pond, Wolfgang Maier, Anton Nekrutenko, James Taylor, Steven Weaver

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Activity

Views: 1302   Downloads: 53

Created: 10th Apr 2020 at 13:44

Last used: 6th Oct 2022 at 19:11

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Total size: 27.5 KB
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