Genomics - MRCA analysis
Version 1

Workflow Type: Galaxy

Dating the most recent common ancestor (MRCA) of SARS-CoV-2. The workflow is used to extract full length sequences of SARS-CoV-2, tidy up their names in FASTA files, produce a multiple sequences alignment and compute a maximum likelihood tree. More info can be found at https://covid19.galaxyproject.org/genomics/

Inputs

ID Name Description Type
0_Input Dataset n/a n/a
  • File

Steps

ID Name Description
1_Remove beginning n/a n/a
2_Convert n/a n/a
3_Cut n/a n/a
4_NCBI Accession Download n/a n/a
5_NormalizeFasta n/a n/a
6_Text transformation n/a n/a
7_Collapse Collection n/a n/a
8_MAFFT n/a n/a
9_FASTTREE n/a n/a
Total size: 27.5 KB
help Creators and Submitter
Creators
  • Dannon Baker
  • Marius van den Beek
  • Dave Bouvier
  • John Chilton
  • Nate Coraor
  • Frederik Coppens
  • Bert Droesbeke
  • Ignacio Eguinoa
  • Simon Gladman
  • Björn Grüning
  • Delphine Larivière
  • Gildas Le Corguillé
  • Andrew Lonie
  • Nicholas Keener
  • Sergei Kosakovsky Pond
  • Wolfgang Maier
  • Anton Nekrutenko
  • James Taylor
  • Steven Weaver
Submitter
License
Activity

Views: 824   Downloads: 46

Created: 10th Apr 2020 at 13:44

Last used: 19th Jan 2022 at 05:07

help Tags
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Version History

Version 1 (earliest) Created 10th Apr 2020 at 13:44 by Bert Droesbeke

Added/updated 3 files


Open master 6bc6cef

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