Genomics - MRCA analysis
Version 1

Workflow Type: Galaxy

Dating the most recent common ancestor (MRCA) of SARS-CoV-2. The workflow is used to extract full length sequences of SARS-CoV-2, tidy up their names in FASTA files, produce a multiple sequences alignment and compute a maximum likelihood tree. More info can be found at https://covid19.galaxyproject.org/genomics/

Click and drag the diagram to pan, double click or use the controls to zoom.

SEEK ID: https://workflowhub.eu/workflows/6?version=1

Inputs

ID	Name	Description	Type
0_Input Dataset	n/a	n/a	File

Steps

ID	Name	Description
1_Remove beginning	n/a	n/a
2_Convert	n/a	n/a
3_Cut	n/a	n/a
4_NCBI Accession Download	n/a	n/a
5_NormalizeFasta	n/a	n/a
6_Text transformation	n/a	n/a
7_Collapse Collection	n/a	n/a
8_MAFFT	n/a	n/a
9_FASTTREE	n/a	n/a

Version History

Version 1 (earliest) Created 10th Apr 2020 at 13:44 by Bert Droesbeke

Added/updated 3 files

Open master 6bc6cef

Creators and Submitter

Creators

Not specified

Additional credit

Dannon Baker, Marius van den Beek, Dave Bouvier, John Chilton, Nate Coraor, Frederik Coppens, Bert Droesbeke, Ignacio Eguinoa, Simon Gladman, Björn Grüning, Delphine Larivière, Gildas Le Corguillé, Andrew Lonie, Nicholas Keener, Sergei Kosakovsky Pond, Wolfgang Maier, Anton Nekrutenko, James Taylor, Steven Weaver

Submitter

Bert Droesbeke

License

MIT License

Activity

Views: 2916 Downloads: 339

Created: 10th Apr 2020 at 13:44

Genomics - MRCA analysis Version 1