Genomics - MRCA analysis
Version 1

Dating the most recent common ancestor (MRCA) of SARS-CoV-2. The workflow is used to extract full length sequences of SARS-CoV-2, tidy up their names in FASTA files, produce a multiple sequences alignment and compute a maximum likelihood tree. More info can be found at https://covid19.galaxyproject.org/genomics/

Inputs

ID Name Description Type
#main/0_Input Dataset n/a n/a File

Steps

ID Name Description
#main/1_Remove beginning
#main/2_Convert
#main/3_Cut
#main/4_NCBI Accession Download
#main/5_NormalizeFasta
#main/6_Text transformation
#main/7_Collapse Collection
#main/8_MAFFT
#main/9_FASTTREE
help Creators and Submitter
Creators
  • Dannon Baker
  • Marius van den Beek
  • Dave Bouvier
  • John Chilton
  • Nate Coraor
  • Frederik Coppens
  • Bert Droesbeke
  • Ignacio Eguinoa
  • Simon Gladman
  • Björn Grüning
  • Delphine Larivière
  • Gildas Le Corguillé
  • Andrew Lonie
  • Nicholas Keener
  • Sergei Kosakovsky Pond
  • Wolfgang Maier
  • Anton Nekrutenko
  • James Taylor
  • Steven Weaver
Submitter
License
Activity

Views: 237   Downloads: 13

Created: 10th Apr 2020 at 13:44

Last used: 23rd Sep 2020 at 05:50

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