Genomics - Assembly of the genome sequence
Version 1

Workflow Type: Galaxy

This workflow uses Illumina and Oxford Nanopore reads that were pre-processed to remove human-derived sequences. Two assembly tools are used: spades and unicycler. In addition to assemblies (actual sequences) the two tools produce assembly graphs that can be used for visualization of assembly with bandage. More info can be found at https://covid19.galaxyproject.org/genomics/

Inputs

ID Name Description Type
0_Input Dataset n/a n/a
  • File
1_Input Dataset n/a n/a
  • File
2_Input Dataset n/a n/a
  • File

Steps

ID Name Description
3_Create assemblies with Unicycler n/a n/a
4_SPAdes n/a n/a
5_Bandage Info n/a n/a
6_Bandage Image n/a n/a
7_Bandage Image n/a n/a
8_Bandage Info n/a n/a

Version History

Version 1 (earliest) Created 10th Apr 2020 at 13:32 by Bert Droesbeke

Added/updated 3 files


Open master e25cdfa
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Dannon Baker, Marius van den Beek, Dave Bouvier, John Chilton, Nate Coraor, Frederik Coppens, Bert Droesbeke, Ignacio Eguinoa, Simon Gladman, Björn Grüning, Delphine Larivière, Gildas Le Corguillé, Andrew Lonie, Nicholas Keener, Sergei Kosakovsky Pond, Wolfgang Maier, Anton Nekrutenko, James Taylor, Steven Weaver

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Views: 986   Downloads: 42

Created: 10th Apr 2020 at 13:32

Last used: 27th Jun 2022 at 03:57

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Total size: 27 KB
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