Genomics - Assembly of the genome sequence
Version 1

This workflow uses Illumina and Oxford Nanopore reads that were pre-processed to remove human-derived sequences. Two assembly tools are used: spades and unicycler. In addition to assemblies (actual sequences) the two tools produce assembly graphs that can be used for visualization of assembly with bandage. More info can be found at https://covid19.galaxyproject.org/genomics/

Inputs

ID Name Description Type
#main/0_Input Dataset n/a n/a File
#main/1_Input Dataset n/a n/a File
#main/2_Input Dataset n/a n/a File

Steps

ID Name Description
#main/3_Create assemblies with Unicycler
#main/4_SPAdes
#main/5_Bandage Info
#main/6_Bandage Image
#main/7_Bandage Image
#main/8_Bandage Info
help Creators and Submitter
Creators
  • Dannon Baker
  • Marius van den Beek
  • Dave Bouvier
  • John Chilton
  • Nate Coraor
  • Frederik Coppens
  • Bert Droesbeke
  • Ignacio Eguinoa
  • Simon Gladman
  • Björn Grüning
  • Delphine Larivière
  • Gildas Le Corguillé
  • Andrew Lonie
  • Nicholas Keener
  • Sergei Kosakovsky Pond
  • Wolfgang Maier
  • Anton Nekrutenko
  • James Taylor
  • Steven Weaver
Submitter
License
Activity

Views: 449   Downloads: 28

Created: 10th Apr 2020 at 13:32

Last used: 11th May 2021 at 09:44

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Version History

Version 1 Created 10th Apr 2020 at 13:32 by Bert Droesbeke

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