Workflow Type: Galaxy
Open
Analysis of variation within individual COVID-19 samples using Illumina Single End data. More info can be found at https://covid19.galaxyproject.org/genomics/
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Inputs
ID | Name | Description | Type |
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0_Input Dataset Collection | n/a | n/a |
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NC_045512 | n/a | n/a |
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Steps
ID | Name | Description |
---|---|---|
10_Call variants | n/a | n/a |
11_SnpEff eff | n/a | n/a |
12_SnpSift Extract Fields | n/a | n/a |
13_Collapse Collection | n/a | n/a |
2_fastp | n/a | n/a |
3_SnpEff build | n/a | n/a |
4_MultiQC | n/a | n/a |
5_Bowtie2 | n/a | n/a |
6_MultiQC | n/a | n/a |
7_MarkDuplicates | n/a | n/a |
8_MultiQC | n/a | n/a |
9_Realign reads | n/a | n/a |
Version History
Version 1 (earliest) Created 10th Apr 2020 at 13:54 by Bert Droesbeke
Added/updated 3 files
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Creators and Submitter
Creators
Not specifiedAdditional credit
Dannon Baker, Marius van den Beek, Dave Bouvier, John Chilton, Nate Coraor, Frederik Coppens, Bert Droesbeke, Ignacio Eguinoa, Simon Gladman, Björn Grüning, Delphine Larivière, Gildas Le Corguillé, Andrew Lonie, Nicholas Keener, Sergei Kosakovsky Pond, Wolfgang Maier, Anton Nekrutenko, James Taylor, Steven Weaver
Submitter
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Created: 10th Apr 2020 at 13:54
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