Genomics - SE Variation
Version 1

Analysis of variation within individual COVID-19 samples using Illumina Single End data. More info can be found at https://covid19.galaxyproject.org/genomics/

Inputs

ID Name Description Type
#main/0_Input Dataset Collection n/a n/a File
#main/NC_045512 n/a n/a File

Steps

ID Name Description
#main/10_Call variants
#main/11_SnpEff eff
#main/12_SnpSift Extract Fields
#main/13_Collapse Collection
#main/2_fastp
#main/3_SnpEff build
#main/4_MultiQC
#main/5_Bowtie2
#main/6_MultiQC
#main/7_MarkDuplicates
#main/8_MultiQC
#main/9_Realign reads
help Creators and Submitter
Creators
  • Dannon Baker
  • Marius van den Beek
  • Dave Bouvier
  • John Chilton
  • Nate Coraor
  • Frederik Coppens
  • Bert Droesbeke
  • Ignacio Eguinoa
  • Simon Gladman
  • Björn Grüning
  • Delphine Larivière
  • Gildas Le Corguillé
  • Andrew Lonie
  • Nicholas Keener
  • Sergei Kosakovsky Pond
  • Wolfgang Maier
  • Anton Nekrutenko
  • James Taylor
  • Steven Weaver
Submitter
License
Activity

Views: 255   Downloads: 13

Created: 10th Apr 2020 at 13:54

Last used: 27th Sep 2020 at 05:20

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