Genomics - SE Variation
Version 1

Workflow Type: Galaxy

Analysis of variation within individual COVID-19 samples using Illumina Single End data. More info can be found at https://covid19.galaxyproject.org/genomics/

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Inputs

ID Name Description Type
0_Input Dataset Collection n/a n/a
  • File
NC_045512 n/a n/a
  • File

Steps

ID Name Description
10_Call variants n/a n/a
11_SnpEff eff n/a n/a
12_SnpSift Extract Fields n/a n/a
13_Collapse Collection n/a n/a
2_fastp n/a n/a
3_SnpEff build n/a n/a
4_MultiQC n/a n/a
5_Bowtie2 n/a n/a
6_MultiQC n/a n/a
7_MarkDuplicates n/a n/a
8_MultiQC n/a n/a
9_Realign reads n/a n/a

Version History

Version 1 (earliest) Created 10th Apr 2020 at 13:54 by Bert Droesbeke

Added/updated 3 files


Open master 1bd5589
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Creators
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Additional credit

Dannon Baker, Marius van den Beek, Dave Bouvier, John Chilton, Nate Coraor, Frederik Coppens, Bert Droesbeke, Ignacio Eguinoa, Simon Gladman, Björn Grüning, Delphine Larivière, Gildas Le Corguillé, Andrew Lonie, Nicholas Keener, Sergei Kosakovsky Pond, Wolfgang Maier, Anton Nekrutenko, James Taylor, Steven Weaver

Submitter
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Activity

Views: 3015   Downloads: 312

Created: 10th Apr 2020 at 13:54

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