Genomics - Recombination and selection analysis
Version 1

Workflow Type: Galaxy

This workflow employs a recombination detection algorithm (GARD) developed by Kosakovsky Pond et al. and implemented in the hyphy package. More info can be found at https://covid19.galaxyproject.org/genomics/

Inputs

ID Name Description Type
0_Input Dataset n/a n/a
  • File

Steps

ID Name Description
1_transeq n/a n/a
2_MAFFT n/a n/a
3_tranalign n/a n/a
4_FASTTREE n/a n/a
5_HyPhy-GARD n/a n/a
6_HyPhy-aBSREL n/a n/a

Version History

Version 1 (earliest) Created 10th Apr 2020 at 14:30 by Bert Droesbeke

Added/updated 3 files


Open master 5c9636b
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Additional credit

Dannon Baker, Marius van den Beek, Dave Bouvier, John Chilton, Nate Coraor, Frederik Coppens, Bert Droesbeke, Ignacio Eguinoa, Simon Gladman, Björn Grüning, Delphine Larivière, Gildas Le Corguillé, Andrew Lonie, Nicholas Keener, Sergei Kosakovsky Pond, Wolfgang Maier, Anton Nekrutenko, James Taylor, Steven Weaver

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Views: 1361   Downloads: 46

Created: 10th Apr 2020 at 14:30

Last used: 27th Jun 2022 at 03:51

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Total size: 22.7 KB
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