Cheminformatics - XChem combined Version 1
Download RO Crate
Run on usegalaxy.euThis workflow is used for the virtual screening of the SARS-CoV-2 main protease (de.NBI-cloud, STFC). It includes Charge enumeration, Generation of 3D conformations, Preparation of active site for docking using rDock, Docking, Scoring and Selection of compounds available. More info can be found at https://covid19.galaxyproject.org/cheminformatics/
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| 0_Input Dataset | n/a | n/a |
|
| 1_Input Dataset | n/a | n/a |
|
| 2_Input Dataset Collection | n/a | n/a |
|
| 3_Input Dataset | n/a | n/a |
|
Steps
| ID | Name | Description |
|---|---|---|
| 4_XChem Docking | n/a | n/a |
| 5_XChem TransFS Scoring | n/a | n/a |
| 6_XChem SuCOS Scoring | n/a | n/a |
Version History
Version 1 (earliest) Created 10th Apr 2020 at 16:02 by Bert Droesbeke
Added/updated 3 files
Open
masterfaee2c9
Creators and SubmitterCreators
Not specifiedAdditional credit
Tim Dudgeon, Simon Bray, Gianmauro Cuccuru, Björn Grüning, Rachael Skyner, Jack Scantlebury, Susan Leung, Frank von Delft
Submitter
Views: 5308 Downloads: 55
Created: 10th Apr 2020 at 16:02
Last used: 28th Jun 2022 at 03:12
Tags AttributionsNone
Related items
https://orcid.org/0000-0003-0522-5674
The goal of COVID-19-Biohackathon 2020 (COVID-19-BH20) is to develop and gather computational tools that can be useful for studying the biology of the virus and the disease.
The COVID-19 Programme in Workflow Hub aims to gather workflows for the analysis of COVID-19 molecular biology data and their metadata. In this programme, all workflows and their metadata will be curated and made interoperable, reusable and reproducible. All workflows and their metadata will be easily accessible to everyone ...
Teams: Connor Lab, GalaxyProject SARS-CoV-2, InSaFLU, nf-core viralrecon, CWL workflow SARS-CoV-2, V-Pipe, Test team
Web page: https://github.com/virtual-biohackathons/covid-19-bh20
Ongoing analysis of COVID-19 using Galaxy, BioConda and public research infrastructures https://covid19.galaxyproject.org
Space: COVID-19 Biohackathon
Public web page: https://github.com/galaxyproject/SARS-CoV-2
