COVID-19 PubSeq Pangenome Generate
Version 1

Workflow Type: Common Workflow Language
Work-in-progress
No description specified

Inputs

ID Name Description Type
inputReads n/a n/a
  • File[]
metadata n/a n/a
  • File[]
metadataSchema n/a n/a
  • File
subjects n/a n/a
  • string[]
exclude n/a n/a
  • File?
bin_widths n/a width of each bin in basepairs along the graph vector
  • int[]
cells_per_file n/a Cells per file on component_segmentation
  • int

Steps

ID Name Description
relabel n/a n/a
dedup n/a n/a
overlapReads n/a n/a
induceGraph n/a n/a
buildGraph n/a n/a
vizGraph n/a n/a
odgi2rdf n/a n/a
mergeMetadata n/a n/a
bin_paths n/a n/a
index_paths Create path index n/a
segment_components Run component segmentation n/a

Outputs

ID Name Description Type
odgiGraph n/a n/a
  • File
odgiPNG n/a n/a
  • File
seqwishGFA n/a n/a
  • File
odgiRDF n/a n/a
  • File
readsMergeDedup n/a n/a
  • File
mergedMetadata n/a n/a
  • File
indexed_paths n/a n/a
  • File
colinear_components n/a n/a
  • Directory
Total size: 3.38 KB
help Creators and Submitter
Creators
Submitter
Discussion Channel
Activity

Views: 541   Downloads: 49

Created: 7th Oct 2020 at 10:36

Last updated: 7th Oct 2020 at 10:40

Last used: 19th Jan 2022 at 01:11

help Attributions

None

Version History

Version 1 (earliest) Created 7th Oct 2020 at 10:36 by Michael R. Crusoe

Added/updated 1 files


Open master c89b183

Related items

Powered by
(v.1.12.0-master)
Copyright © 2008 - 2021 The University of Manchester and HITS gGmbH

By continuing to use this site you agree to the use of cookies