COVID-19 PubSeq Pangenome Generate
Version 1

Workflow Type: Common Workflow Language
Work-in-progress
No description specified

Inputs

ID Name Description Type
inputReads n/a n/a n/a
metadata n/a n/a n/a
metadataSchema n/a n/a n/a
subjects n/a n/a n/a
exclude n/a n/a n/a
bin_widths n/a width of each bin in basepairs along the graph vector int[]
cells_per_file n/a Cells per file on component_segmentation int

Steps

ID Name Description
relabel
dedup
overlapReads
induceGraph
buildGraph
vizGraph
odgi2rdf
mergeMetadata
bin_paths
index_paths Create path index
segment_components Run component segmentation

Outputs

ID Name Description Type
odgiGraph n/a n/a File
odgiPNG n/a n/a File
seqwishGFA n/a n/a File
odgiRDF n/a n/a File
readsMergeDedup n/a n/a File
mergedMetadata n/a n/a File
indexed_paths n/a n/a File
colinear_components n/a n/a Directory
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Views: 486   Downloads: 47

Created: 7th Oct 2020 at 10:36

Last updated: 7th Oct 2020 at 10:40

Last used: 7th Dec 2021 at 04:43

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Version History

Version 1 Created 7th Oct 2020 at 10:36 by Michael R. Crusoe

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