COVID-19 PubSeq Pangenome Generate
Version 1

Workflow Type: Common Workflow Language
Work-in-progress
No description specified

Inputs

ID Name Description Type
inputReads n/a n/a
  • File[]
metadata n/a n/a
  • File[]
metadataSchema n/a n/a
  • File
subjects n/a n/a
  • string[]
exclude n/a n/a
  • File?
bin_widths n/a width of each bin in basepairs along the graph vector
  • int[]
cells_per_file n/a Cells per file on component_segmentation
  • int

Steps

ID Name Description
relabel n/a n/a
dedup n/a n/a
overlapReads n/a n/a
induceGraph n/a n/a
buildGraph n/a n/a
vizGraph n/a n/a
odgi2rdf n/a n/a
mergeMetadata n/a n/a
bin_paths n/a n/a
index_paths Create path index n/a
segment_components Run component segmentation n/a

Outputs

ID Name Description Type
odgiGraph n/a n/a
  • File
odgiPNG n/a n/a
  • File
seqwishGFA n/a n/a
  • File
odgiRDF n/a n/a
  • File
readsMergeDedup n/a n/a
  • File
mergedMetadata n/a n/a
  • File
indexed_paths n/a n/a
  • File
colinear_components n/a n/a
  • Directory

Version History

Version 1 (earliest) Created 7th Oct 2020 at 10:36 by Michael R. Crusoe

Added/updated 1 files


Open master c89b183
help Creators and Submitter
Creators
Additional credit

Pjotr Prins, Andrea Guarracino, Peter Amstutz, Thomas Liener, Adam Novak, Bonface Munyoki, Tazro Inutano Ohta, Michael Heuer

Submitter
Discussion Channel
Activity

Views: 745   Downloads: 55

Created: 7th Oct 2020 at 10:36

Last updated: 7th Oct 2020 at 10:40

Last used: 22nd Jun 2022 at 14:51

help Attributions

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Total size: 3.38 KB
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