Workflow Type: Common Workflow Language
Frozen
Work-in-progress
No description specified
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Inputs
ID | Name | Description | Type |
---|---|---|---|
inputReads | n/a | n/a |
|
metadata | n/a | n/a |
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metadataSchema | n/a | n/a |
|
subjects | n/a | n/a |
|
exclude | n/a | n/a |
|
bin_widths | n/a | width of each bin in basepairs along the graph vector |
|
cells_per_file | n/a | Cells per file on component_segmentation |
|
Steps
ID | Name | Description |
---|---|---|
relabel | n/a | n/a |
dedup | n/a | n/a |
overlapReads | n/a | n/a |
induceGraph | n/a | n/a |
buildGraph | n/a | n/a |
vizGraph | n/a | n/a |
odgi2rdf | n/a | n/a |
mergeMetadata | n/a | n/a |
bin_paths | n/a | n/a |
index_paths | Create path index | n/a |
segment_components | Run component segmentation | n/a |
Outputs
ID | Name | Description | Type |
---|---|---|---|
odgiGraph | n/a | n/a |
|
odgiPNG | n/a | n/a |
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seqwishGFA | n/a | n/a |
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odgiRDF | n/a | n/a |
|
readsMergeDedup | n/a | n/a |
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mergedMetadata | n/a | n/a |
|
indexed_paths | n/a | n/a |
|
colinear_components | n/a | n/a |
|
Version History
Version 1 (earliest) Created 7th Oct 2020 at 10:36 by Michael R. Crusoe
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Version-1
c89b183
Creators and Submitter
Creators
Submitter
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Citation
Soiland-Reyes, S., & Crusoe, M. R. (2022). COVID-19 PubSeq Pangenome Generate. WorkflowHub. https://doi.org/10.48546/WORKFLOWHUB.WORKFLOW.63.1
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Views: 2611 Downloads: 868
Created: 7th Oct 2020 at 10:36
Last updated: 21st Sep 2022 at 10:26
Attributions
None