WorkflowHub

5 items tagged with 'Virology'.

People (1)
Workflows (4)

Teams: Not specified

Organizations: Not specified

Expertise: Bioinformatics, Computer Science, Data Management, Genetics, Genomics, Machine Learning, Metagenomics, NGS, Scientific workflow developement, Software Engineering

Tools: Databases, Galaxy, Genomics, Jupyter notebook, Machine Learning, Nextflow, nf-core, PCR, Perl, Python, R, rtPCR, Snakemake, Transcriptomics, Virology, Web, Web services, Workflows

Dad, husband and PhD. Scientist, technologist and engineer. Bibliophile. Philomath. Passionate about science, medicine, research, computing and all things geeky!

1: Plant virus detection with kraken2 (SE)

Integrated and Urban Plant Pathology Laboratory

Stable

Metagenomic dataset taxonomic classification using kraken2

Type: Galaxy

Creators: None

Submitter: johan Rollin

Download

Created: 17th Jun 2021 at 10:14

3: Plant virus exploration

Integrated and Urban Plant Pathology Laboratory

Stable

Just the cleaning then assembly of all reads. TO explore further follow one of the paths described in "Global view" (WF 0)

Type: Galaxy

Creators: None

Submitter: johan Rollin

Download

Created: 4th Feb 2021 at 09:11, Last updated: 4th Feb 2021 at 09:12

2: Plant virus confirmation

Integrated and Urban Plant Pathology Laboratory

Stable

Mapping against all plant virus then make contig out of the mapped reads then blast them.

Type: Galaxy

Creators: None

Submitter: johan Rollin

Download

Created: 4th Feb 2021 at 09:10

1: Plant virus detection with kraken2 (PE)

Integrated and Urban Plant Pathology Laboratory

Stable

Metagenomic dataset taxonomic classification using kraken2

Type: Galaxy

Creators: None

Submitter: johan Rollin

Download

Created: 4th Feb 2021 at 09:07, Last updated: 17th Jun 2021 at 10:10