Expertise: Bioinformatics, Computer Science, Data Management, Genetics, Genomics, Machine Learning, Metagenomics, NGS, Scientific workflow developement, Software Engineering
Tools: Databases, Galaxy, Genomics, Jupyter notebook, Machine Learning, Nextflow, nf-core, PCR, Perl, Python, R, rtPCR, Snakemake, Transcriptomics, Virology, Web, Web services, Workflows
Dad, husband and PhD. Scientist, technologist and engineer. Bibliophile. Philomath. Passionate about science, medicine, research, computing and all things geeky!
Abstract (Expand)
Authors: Cristina S. Ferreira, Yasmmin C. Martins, Rangel Celso Souza, Ana Tereza R. Vasconcelos
Date Published: 2021
Publication Type: Journal
DOI: 10.7717/peerj.12548
Citation: PeerJ 9:e12548
A workflow for the analysis of pox virus genomes sequenced as half-genomes (for ITR resolution) in a tiled-amplicon approach
Metagenomic dataset taxonomic classification using kraken2
Just the cleaning then assembly of all reads. TO explore further follow one of the paths described in "Global view" (WF 0)
Mapping against all plant virus then make contig out of the mapped reads then blast them.
Metagenomic dataset taxonomic classification using kraken2