3 items tagged with 'Virus'.
Stable
PAIRED-END workflow. Align reads on fasta reference/assembly using bwa mem, get a consensus, variants, mutation explanations.
IMPORTANT:
- For "bcftools call" consensus step, the --ploidy file is in "Données partagées" (Shared Data) and must be imported in your history to use the worflow by providing this file (tells bcftools to consider haploid variant calling).
- SELECT THE MOST ADAPTED VADR MODEL for annotation (see vadr parameters).
Created: 28th Jun 2023 at 10:52, Last updated: 2nd Oct 2023 at 14:45
Views: 403, Downloads: 100
Stable
SINGLE-END workflow. Align reads on fasta reference/assembly using bwa mem, get a consensus, variants, mutation explanations.
IMPORTANT:
- For "bcftools call" consensus step, the --ploidy file is in "Données partagées" (Shared Data) and must be imported in your history to use the worflow by providing this file (tells bcftools to consider haploid variant calling).
- SELECT the mot ADAPTED VADR MODEL for annotation (see vadr parameters).
Created: 27th Jun 2023 at 15:41, Last updated: 2nd Oct 2023 at 14:32
Views: 394, Downloads: 39
Work-in-progress
Non-functional workflow to get a global view of possibilities for plant virus classification.
Created: 4th Feb 2021 at 09:05
Views: 1432, Downloads: 64