1: Plant virus detection with kraken2 (PE)
Version 1

Workflow Type: Galaxy
Stable

Metagenomic dataset taxonomic classification using kraken2

Inputs

ID Name Description Type
Data_R1.fastq Data_R1.fastq n/a n/a
Data_R2.fastq Data_R2.fastq n/a n/a
single_paired single_paired runtime parameter for tool Kraken2 n/a
single_paired single_paired runtime parameter for tool Kraken2 n/a
input input runtime parameter for tool Convert Kraken n/a
type_of_data type_of_data runtime parameter for tool Krona pie chart n/a

Steps

ID Name Description
0 Data_R1.fastq
1 Data_R2.fastq
2 Kraken2: taxonomic prediction provide different taxonomic prediction with several false positive. WARNING: consider changing the database toolshed.g2.bx.psu.edu/repos/iuc/kraken2/kraken2/2.1.1+galaxy0
3 Convert kraken file just re-arrange the column of the tabular file so it can be ready for krona representation toolshed.g2.bx.psu.edu/repos/devteam/kraken2tax/Kraken2Tax/1.2
4 Krona pie chart Improve kraken2 taxonomic result representation in a HTLM report toolshed.g2.bx.psu.edu/repos/crs4/taxonomy_krona_chart/taxonomy_krona_chart/2.7.1+galaxy0

Outputs

ID Name Description Type
report_output report_output n/a
output output n/a
out_file out_file n/a
output output n/a

Version History

Version 1 (earliest) Created 4th Feb 2021 at 09:07 by johan Rollin

Added/updated 1 files


Open master 26feb9a
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Views: 874   Downloads: 39

Created: 4th Feb 2021 at 09:07

Last updated: 17th Jun 2021 at 10:10

Last used: 7th Oct 2022 at 10:36

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Total size: 12.5 KB
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