3: Plant virus exploration
Version 1

Workflow Type: Galaxy
Work-in-progress

Just the cleaning then assembly of all reads. TO explore further follow one of the paths described in "Global view" (WF 0)

Steps

ID Name Description
0 fastp: clean reads toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.20.1+galaxy0
1 Shovill toolshed.g2.bx.psu.edu/repos/iuc/shovill/shovill/1.1.0+galaxy0

Outputs

ID Name Description Type
_anonymous_output_1 _anonymous_output_1 n/a
  • File
fastp on input dataset(s): HTML report fastp on input dataset(s): HTML report n/a
  • File
fastp on input dataset(s): Read 1 output fastp on input dataset(s): Read 1 output n/a
  • File
Shovill on input dataset(s) Log file Shovill on input dataset(s) Log file n/a
  • File
Shovill on input dataset(s): Contigs Shovill on input dataset(s): Contigs n/a
  • File

Version History

Version 1 (earliest) Created 4th Feb 2021 at 09:11 by johan Rollin

Added/updated 1 files


Open master bcc033e
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Views: 2743   Downloads: 147

Created: 4th Feb 2021 at 09:11

Last updated: 10th Feb 2023 at 10:06

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Total size: 8.34 KB
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