3: Plant virus exploration
Version 1

Workflow Type: Galaxy
Stable

Just the cleaning then assembly of all reads. TO explore further follow one of the paths described in "Global view" (WF 0)

Inputs

ID Name Description Type
single_paired single_paired runtime parameter for tool fastp n/a
single_paired single_paired runtime parameter for tool fastp n/a

Steps

ID Name Description
0 fastp: clean reads toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.20.1+galaxy0
1 Shovill toolshed.g2.bx.psu.edu/repos/iuc/shovill/shovill/1.1.0+galaxy0

Outputs

ID Name Description Type
out1 out1 n/a
out2 out2 n/a
report_html report_html n/a
shovill_std_log shovill_std_log n/a
contigs contigs n/a
contigs_graph contigs_graph n/a

Version History

Version 1 (earliest) Created 4th Feb 2021 at 09:11 by johan Rollin

Added/updated 1 files


Open master bcc033e
help Creators and Submitter
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Activity

Views: 938   Downloads: 31

Created: 4th Feb 2021 at 09:11

Last updated: 4th Feb 2021 at 09:12

Last used: 2nd Dec 2022 at 06:21

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Total size: 8.34 KB
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