Biodiversity & ecology workflows

This is an inclusive super-collection of workflows related to biodiversity and ecology. A big portion covers genome assembly of newly-sequenced species, using long reads (ONT or PacBio HiFi), possibly complemented by chromosome capture (typically HiC) for scaffolding, or/and by short reads (typically Illumina). However, it aims at collating all workflows related to ecology, biodiversity, biogeography, natural history, and related scientific areas, across the whole WorkflowHub and regardless of the workflow format (Galaxy, Nextflow, Snakemake, etc.).

This collection focuses on wildlife; and genomics, ecology, biogeography, and evolution of wildlife across all kingdoms of life on Earth, especially "macroscopic". The focus of this collection is on multicellular, "macroscopic" eukaryotes, because there is an abundance of other tools and services working with microorganisms and their ecology.