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Secondary metabolite biosynthetic gene cluster (SMBGC) Annotation using Neural Networks Trained on Interpro Signatures
Inputs
ID | Name | Description | Type |
---|---|---|---|
Fasta nucelotide file | n/a | BGC0001472.fna |
|
Steps
ID | Name | Description |
---|---|---|
Prodigal Gene Predictor | n/a | Create the protein fasta file |
Sanntis: Build Genbank | n/a | Use of Sanntis |
Regex Find And Replace | n/a | Remove useless * in the protein fasta file |
InterProScan | n/a | Create TSV file for Sanntis |
Sanntis: identify biosynthetic gene clusters | n/a | n/a |
Outputs
ID | Name | Description | Type |
---|---|---|---|
Protein fasta file | n/a | n/a |
|
Genbank file | n/a | n/a |
|
Clean protein fasta file | n/a | n/a |
|
Tabular file (.tsv) | n/a | n/a |
|
SMBGC Annotation | n/a | n/a |
|
Version History
Version 1 (earliest) Created 21st Aug 2024 at 09:17 by Marie Jossé
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Created: 21st Aug 2024 at 09:17
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