ERGA DataQC ONT v2311 (WF0)
Version 1

Workflow Type: Galaxy
Stable

The workflow takes ONT reads collection, runs SeqKit and Nanoplot. The main outputs are a table and plots of raw reads stats.

Inputs

ID Name Description Type
ONT raw reads collection #main/ONT raw reads collection n/a
  • array containing
    • File

Steps

ID Name Description
1 NanoPlot toolshed.g2.bx.psu.edu/repos/iuc/nanoplot/nanoplot/1.41.0+galaxy0
2 SeqKit ONT raw toolshed.g2.bx.psu.edu/repos/iuc/seqkit_stats/seqkit_stats/2.3.1+galaxy1
3 SeqKit ONT toolshed.g2.bx.psu.edu/repos/nml/collapse_collections/collapse_dataset/5.1.0

Version History

Version 1 (earliest) Created 8th Jan 2024 at 15:25 by Diego De Panis

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Views: 651

Created: 8th Jan 2024 at 15:25

Last updated: 8th Jan 2024 at 15:57

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