Population and community metrics calculation from Biodiversity data
Version 2

Stable

Galaxy-E (ecology.usegalaxy.eu) workflow to calculate species presence / absence, community metrics and compute generalized linear models to identify effects and significativity of these effects on biodiversity.

Inputs

ID Name Description Type
input input runtime parameter for tool Calculate community metrics n/a

Steps

ID Name Description
0 Observations Species count. A tabular file with observation data. Must at least contain three columns 'observation.unit' which associate year and location (alternatively, you can have this column splited in 2 columns named 'year' and 'location'), 'species.code' with species ID and 'number' for abundance.
1 Unitobs Sampling sites geographical and temporal informations
2 Calculate community metrics toolshed.g2.bx.psu.edu/repos/ecology/pampa_communitymetrics/pampa_communitymetrics/0.0.1
3 Calculate presence absence table toolshed.g2.bx.psu.edu/repos/ecology/pampa_presabs/pampa_presabs/0.0.1
4 Compute GLM on community data toolshed.g2.bx.psu.edu/repos/ecology/pampa_glmcomm/pampa_glmcomm/0.0.1
5 Compute GLM on population data toolshed.g2.bx.psu.edu/repos/ecology/pampa_glmsp/pampa_glmsp/0.0.1

Outputs

ID Name Description Type
output_community output_community n/a tabular
output_presabs output_presabs n/a tabular
output_summary output_summary n/a tabular
output_recap output_recap n/a txt
output_rate output_rate n/a txt
output_summary output_summary n/a tabular
output_recap output_recap n/a txt
output_rate output_rate n/a txt
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Views: 95   Downloads: 4

Created: 24th Jul 2020 at 13:27

Last updated: 24th Jul 2020 at 14:00

Last used: 13th Aug 2020 at 14:29

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