Stable
Galaxy-E (ecology.usegalaxy.eu) workflow to calculate species presence / absence, community metrics and compute generalized linear models to identify effects and significativity of these effects on biodiversity.
Inputs
ID | Name | Description | Type |
---|---|---|---|
input | input | runtime parameter for tool Calculate community metrics | n/a |
Steps
ID | Name | Description |
---|---|---|
0 | Observations | Species count. A tabular file with observation data. Must at least contain three columns 'observation.unit' which associate year and location (alternatively, you can have this column splited in 2 columns named 'year' and 'location'), 'species.code' with species ID and 'number' for abundance. |
1 | Unitobs | Sampling sites geographical and temporal informations |
2 | Calculate community metrics | toolshed.g2.bx.psu.edu/repos/ecology/pampa_communitymetrics/pampa_communitymetrics/0.0.1 |
3 | Calculate presence absence table | toolshed.g2.bx.psu.edu/repos/ecology/pampa_presabs/pampa_presabs/0.0.1 |
4 | Compute GLM on community data | toolshed.g2.bx.psu.edu/repos/ecology/pampa_glmcomm/pampa_glmcomm/0.0.1 |
5 | Compute GLM on population data | toolshed.g2.bx.psu.edu/repos/ecology/pampa_glmsp/pampa_glmsp/0.0.1 |
Outputs
ID | Name | Description | Type |
---|---|---|---|
output_community | output_community | n/a | tabular |
output_presabs | output_presabs | n/a | tabular |
output_summary | output_summary | n/a | tabular |
output_recap | output_recap | n/a | txt |
output_rate | output_rate | n/a | txt |
output_summary | output_summary | n/a | tabular |
output_recap | output_recap | n/a | txt |
output_rate | output_rate | n/a | txt |

Creators
Submitter
Discussion Channel
License
Activity
Views: 384 Downloads: 25
Created: 24th Jul 2020 at 13:27
Last updated: 24th Jul 2020 at 14:00
Last used: 1st Mar 2021 at 09:10


None
Version History
Version 2 (latest) Created 24th Jul 2020 at 14:00 by Yvan Le Bras
No revision comments