Fgenesh annotation -TSI
Version 1

Workflow Type: Galaxy

This is part of a series of workflows to annotate a genome, tagged with TSI-annotation. These workflows are based on command-line code by Luke Silver, converted into Galaxy Australia workflows.

The workflows can be run in this order:

  • Repeat masking
  • RNAseq QC and read trimming
  • Find transcripts
  • Combine transcripts
  • Extract transcripts
  • Convert formats
  • Fgenesh annotation

Steps

ID Name Description
0 FGENESH split fgenesh_split
1 FGENESH split fgenesh_split
2 FGENESH annotate fgenesh_annotate
3 FGENESH merge fgenesh_merge
4 FGENESH merge fgenesh_merge
5 FGENESH get mRNA or GC fgenesh_get_mrnas_gc
6 FGENESH get mRNA or GC fgenesh_get_mrnas_gc
7 FGENESH get protein fgenesh_get_proteins
8 Busco toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.5.0+galaxy0

Version History

Version 1 (earliest) Created 8th May 2024 at 08:28 by Anna Syme

Initial commit


Frozen Version-1 1b30a7e
help Creators and Submitter
Creator
  • Luke Silver
Submitter
Citation
Silver, L. (2024). Fgenesh annotation -TSI. WorkflowHub. https://doi.org/10.48546/WORKFLOWHUB.WORKFLOW.881.1
Activity

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Created: 8th May 2024 at 08:28

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Total size: 1.01 MB
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