2 items tagged with 'variant calling'.
Stable
StructuralVariants Workflow
Type: Common Workflow Language
Creators: Laura Rodriguez-Navas, Daniel López-López
Submitter: Laura Rodriguez-Navas
Created: 14th Mar 2022 at 12:07, Last updated: 10th May 2022 at 10:04
Work-in-progress
Bootstrapping-for-BQSR @ NCI-Gadi is a pipeline for bootstrapping a variant resource to enable GATK base quality score recalibration (BQSR) for non-model organisms that lack a publicly available variant resource. This implementation is optimised for the National Compute Infrastucture's Gadi HPC. Multiple rounds of bootstrapping can be performed. Users can use Fastq-to-bam @ NCI-Gadi and Germline-ShortV @ NCI-Gadi to ...
Created: 18th Aug 2021 at 00:26, Last updated: 7th Sep 2021 at 07:24