Workflows

What is a Workflow?
817 Workflows visible to you, out of a total of 891
CEITEC layer 1 workflow
Work-in-progress

The second-level complexity workflow is one among a collection of workflows designed to address tasks up to CTF estimation. In addition to the functionalities provided by the layer 0 workflow, this workflow aims to enhance the quality of acquisition images using quality protocols.

Quality control protocols

  • Movie max shift: automatic reject those movies whose frames move more than a given threshold. 

  • Tilt analysis: quality score based in the Power Spectrum Density (astigmatism and ...

Type: Scipion

Creators: None

Submitters: Daniel Marchan, Pablo Conesa

CRYOSPARC: acquire -> motionCorr -> ctf -> report
Work-in-progress

SPA workflow using cryosparc processing engine

Type: Unrecognized workflow type

Creators: None

Submitter: Radek Veverka

SCIPION: acquire -> motionCorr -> ctf -> report
Work-in-progress

The simplest workflow among a collection of workflows intended to solve tasks up to CTF estimation.

Type: Scipion

Creators: None

Submitter: Daniel Marchan

KMeans housing

Name: KMeans Contact Person: [email protected] Access Level: public License Agreement: Apache2 Platform: COMPSs Machine: MareNostrum5

KMEans for clustering the housing.csv dataset (https://github.com/sonarsushant/California-House-Price-Prediction/blob/master/housing.csv). This application used dislib-0.9.0

Type: COMPSs

Creator: Fernando Vázquez-Novoa

Submitters: Raül Sirvent, Fernando Vázquez-Novoa

Randomized SVD
Stable

Name: TruncatedSVD (Randomized SVD) Contact Person: [email protected] Access Level: public License Agreement: Apache2 Platform: COMPSs Machine: MareNostrum5

TruncatedSVD (Randomized SVD) for computing just 456 singular values out of a (4.5M x 850) size matrix. The input matrix represents a CFD transient simulation of air moving past a cylinder. This application used dislib-0.9.0

Type: COMPSs

Creator: Cristian Tatu

Submitter: Cristian Tatu

gene-based-pathogen-identification/main

Nanopore datasets analysis - Phylogenetic Identification - antibiotic resistance genes detection and contigs building

Type: Galaxy

Creators: Engy Nasr, Bérénice Batut, Paul Zierep

Submitter: WorkflowHub Bot

DOI: 10.48546/workflowhub.workflow.1062.1

nanopore-pre-processing/main

Microbiome - QC and Contamination Filtering

Type: Galaxy

Creators: Bérénice Batut, Engy Nasr, Paul Zierep

Submitter: WorkflowHub Bot

DOI: 10.48546/workflowhub.workflow.1061.1

pathogen-detection-pathogfair-samples-aggregation-and-visualisation/main

Pathogens of all samples report generation and visualization

Type: Galaxy

Creators: Engy Nasr, Bérénice Batut, Paul Zierep

Submitter: WorkflowHub Bot

DOI: 10.48546/workflowhub.workflow.1060.1

taxonomy-profiling-and-visualization-with-krona/main

Microbiome - Taxonomy Profiling

Type: Galaxy

Creators: Engy Nasr, Bérénice Batut, Paul Zierep

Submitter: WorkflowHub Bot

DOI: 10.48546/workflowhub.workflow.1059.1

IMPaCT-Data quality control workflow implementation in nf-core/Sarek

IMPaCT program

IMPaCT IMPaCT-isciii IMPaCT-Data ...

Type: Nextflow

Creators: Arnau Soler Costa, Amy Curwin, Jordi Rambla, All the Sarek team, nf-core comunity and people in the IMPaCT-Data project.

Submitter: Arnau Soler Costa

DOI: 10.48546/workflowhub.workflow.1030.2

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