Workflows

What is a Workflow?
660 Workflows visible to you, out of a total of 706

Assembly of bacterial paired-end short read data with generation of quality metrics and reports

Type: Galaxy

Creators: Abromics , Pierre Marin, Clea Siguret, abromics-consortium

Submitter: WorkflowHub Bot

Work-in-progress

Workflow for gene set enrichment analsysis (GSEA) and co-expression analysis (WGCNA) on transcriptomics data to analyze pathways affected in Porto-Sinusoidal Vascular Disease.

Type: Common Workflow Language

Creators: Aishwarya Iyer, Friederike Ehrhart

Submitter: Aishwarya Iyer

Work-in-progress

The simplest workflow among a collection of workflows intended to solve tasks up to CTF estimation.

Basic processing pipeline

  • Import movies

  • Movie alignment (recommended 2 GPUs)

  • CTF estimation

Monitor acquisition

  • Monitor summary protocol: 
  • Monitor basic parameters (item counts, drift, resolution, astigmatism, defocus, etc.)
  • Raise alarms (mail setting available)
  • Provides information of the basic steps (html report)

Type: Scipion

Creators: None

Submitter: Daniel Marchan

Stable

Predict variants and drug resistance from M. tuberculosis sequence samples (Illumina)

Type: Galaxy

Creator: Peter van Heusden

Submitter: Peter van Heusden

IMPaCT program

IMPaCT IMPaCT-isciii IMPaCT-Data

Introduction of the project

IMPaCT-Data is the IMPaCT ...

Type: Nextflow

Creators: Arnau Soler Costa, Amy Curwin, Jordi Rambla, All the Sarek team, nf-core comunity and people in the IMPaCT-Data project.

Submitter: Arnau Soler Costa

DOI: 10.48546/workflowhub.workflow.1030.2

Stable

Variant Interpretation Pipeline (VIP) that annotates, filters and reports prioritized causal variants in humans, see https://github.com/molgenis/vip for more information.

Type: Unrecognized workflow type

Creators: None

Submitter: Dennis Hendriksen

A pipeline for ortholog fetching and analysis

Type: Nextflow

Creator: itrujnara

Submitter: WorkflowHub Bot

GATK4 RNA variant calling pipeline

Type: Nextflow

Creators: @praveenraj2018 , @praveenraj2018

Submitter: WorkflowHub Bot

Nextflow rnafusion analysis pipeline, part of the nf-core community.

Type: Nextflow

Creator: Martin Proks

Submitter: WorkflowHub Bot

An analysis pipeline for Molecular Cartography data from Resolve Biosciences.

Type: Nextflow

Creators: @kbestak , @kbestak , @FloWuenne , @FloWuenne

Submitter: WorkflowHub Bot

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