Workflows

What is a Workflow?
1237 Workflows visible to you, out of a total of 1318
EC-Earth3 workflow without wrappers in MareNostrum 5

EC-Earth3 workflow with wrappers running in MareNostrum 5 with Autosubmit 3, used to assess the effects of task aggregation on queueing times. Workflow configuration is based on the Auto-EC-Earth3's testing suite [1].

In order to reduce the size of the workflow, the /proj and /tmp directories have been deleted. Additionally, the experiment has been cleaned up with the Autosubmit cleanup command. Authorized users will be able to fetch the project files from the original remote source.

[1] Garcia ...

Type: Autosubmit

Creators: Pablo Goitia, The Auto-EC-Earth team

Submitter: Pablo Goitia

EC-Earth3 workflow with wrappers in MareNostrum 5

EC-Earth3 workflow with wrappers running in MareNostrum 5 with Autosubmit 3, used to assess the effects of task aggregation on queueing times. Workflow configuration is based on the Auto-EC-Earth3's testing suite [1].

In order to reduce the size of the workflow, the /proj and /tmp directories have been deleted. Additionally, the experiment has been cleaned up with the Autosubmit cleanup command. Authorized users will be able to fetch the project files from the original remote source.

[1] Garcia ...

Type: Autosubmit

Creators: Pablo Goitia, The Auto-EC-Earth team

Submitter: Pablo Goitia

EC-Earth3 workflow without wrappers in MareNostrum 4

EC-Earth3 workflow with wrappers running in MareNostrum 4 with Autosubmit 3, used to assess the effects of task aggregation on queueing times. Workflow configuration is based on the Auto-EC-Earth3's testing suite [1].

In order to reduce the size of the workflow, the /proj and /tmp directories have been deleted. Additionally, the experiment has been cleaned up with the Autosubmit cleanup command. Authorized users will be able to fetch the project files from the original remote source.

[1] Garcia ...

Type: Autosubmit

Creators: Pablo Goitia, The Auto-EC-Earth team

Submitter: Pablo Goitia

EC-Earth3 workflow with wrappers in MareNostrum 4

EC-Earth3 workflow with wrappers running in MareNostrum 4 with Autosubmit 3, used to assess the effects of task aggregation on queueing times. Workflow configuration is based on the Auto-EC-Earth3's testing suite [1].

In order to reduce the size of the workflow, the /proj and /tmp directories have been deleted. Additionally, the experiment has been cleaned up with the Autosubmit cleanup command. Authorized users will be able to fetch the project files from the original remote source.

[1] Garcia ...

Type: Autosubmit

Creators: Pablo Goitia, The Auto-EC-Earth team

Submitter: Pablo Goitia

[DTC-V1] WF5101: Volcanic unrest
Work-in-progress

CWL + RO-Crate Workflow Descriptions

This repository stores computational workflows described using the Common Workflow Language (CWL) and enriched with metadata using Research Object Crate (RO-Crate) conforming to the Workflow Run RO-Crate profile.

Each workflow is contained in its own directory (e.g., WF5201, WF6101, ...). Inside each workflow directory you will typically find at least:

  • The CWL workflow definition (with the same name as the directory, e.g., WF5201.cwl). ...

Type: Common Workflow Language

Creators: None

Submitter: Rebecca Bruni

[DTC-T1] WF6101: Tsunami impact forecasting
Work-in-progress

This repository contains a Common Workflow Language (CWL) and Ro-Crate metadata definition for DTC-T1 workflow 6101, which is designed for providing tsunami impact forecasting following a tsunamigenic earthquake event, based on a probabilistic approach. The workflow integrates real-time earthquake data, runs HPC simulations, and generates tsunami hazard maps.

The main CWL implementation is found in WF6101.cwl, together with ST610106 and ST610109 describing complex steps. The file mini-ST610106.cwl ...

Type: Common Workflow Language

Creator: Marco Salvi

Submitters: Raül Sirvent, Pablo Orviz

WGS2Protein v3.0.0
Stable

This workflow extracts protein-coding sequences from whole genome sequencing (WGS) data obtained from the European Nucleotide Archive (ENA). It automates the preprocessing, annotation, and selection of relevant protein sequences using tools such as Prokka, FASTA-to-Tabular, and pattern-based selection. The resulting dataset supports downstream analyses including comparative genomics, phylogenetics, and functional annotation.

Type: Galaxy

Creator: Crist John M. Pastor

Submitter: Crist John Pastor

ACT-Seq data processing workflow
Stable

This workflow supports processing of bulk ACT-Seq data from raw reads to genome-wide accessiblity tracks (bigWig) and ACT-Seq peaks. The main steps include read trimming using trimGalore, alignment with bowtie2, coverage generation using samtools and peak calling with MACS2.

Type: Common Workflow Language

Creator: Kersten Breuer

Submitter: Pavlo Lutsik

CUT'N'RUN data processing workflow
Stable

This workflow supports processing of bulk CUT'N'RUN data from raw reads to genome-wide accessiblity tracks (bigWig) and CUT'N'RUN peaks. The main steps include read trimming using trimGalore, alignment with bowtie2, coverage generation using samtools and peak calling with MACS2.

Type: Common Workflow Language

Creator: Kersten Breuer

Submitter: Pavlo Lutsik

nf-core/pathogensurveillance

GitHub Actions CI Status GitHub Actions Linting StatusAWS CI[![Cite ...

Type: Nextflow

Creators: None

Submitter: WorkflowHub Bot

Powered by
 (v.1.17.0-main)
About WorkflowHub | Acknowledgements | Credits | Terms & Conditions | Privacy Policy | Cite us | Contact us
Copyright © 2008 - 2025 The University of Manchester and HITS gGmbH