Workflows
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Workflow type
R markdown1
Submitter
Liang Cheng1
Team
EnrichDO1
Intergalactic Workflow Commission (IWC)87
nf-core82
BioBB Building Blocks80
Australian BioCommons44
Workflows and Distributed Computing38
Galaxy Australia30
ERGA Assembly22
GalaxyProject SARS-CoV-221
usegalaxy-eu20
QCIF Bioinformatics20
Sydney Informatics Hub17
UNLOCK15
Galaxy Training Network13
NIH CFDE Playbook Workflow Partnership13
COMPSs Tutorials13
PNDB12
EuroScienceGateway11
eFlows4HPC general11
MGnify9
Galaxy Climate8
OME8
PerMedCoE8
IBISBA Workflows7
yPublish - Bioinfo tools7
Laserfarm applications to European demonstration sites7
CWL workflow SARS-CoV-26
Integrated and Urban Plant Pathology Laboratory6
EJPRD WP13 case-studies workflows6
HoloFood at MGnify6
Tree of Life Genome Analysis6
EGA6
IMBforge5
UX trial team5
iPC: individualizedPaediatricCure5
Specimen Data Refinery5
Cluster Emergent del Cervell Humà5
Seq4AMR5
Biodiversity Genomics Europe (general)5
NanoGalaxy4
SANBI Pathogen Bioinformatics4
Biodata Analysis Group4
Tree of Life Genome Assembly4
Generalized Open-Source Workflows for Atomistic Molecular Dynamics Simulations of Viral Helicases4
UFZ - Image Data Management and Processing Workflows4
SARS-CoV-2 Data Hubs3
Snakemake-Workflows3
ODA3
CO2MICS Lab3
EU-Openscreen3
TRON gGmbH3
TRE-FX3
Euro-BioImaging3
ERGA Annotation3
Scipion CNB3
BY-COVID (general)3
Chemical Data Lab3
NHM Clark group3
Proteomics CEITEC3
FAIR-EASE3
nf-core viralrecon2
V-Pipe2
EOSC-Life - Demonstrator 7: Rare Diseases2
Pawsey Supercomputing Research Centre2
SeBiMER2
Applied Computational Biology at IEG/HMGU2
INFRAFRONTIER workflows2
TransBioNet2
CRC Cohort2
Workflows Australia2
Medizinisches Proteom-Center, Medical Bioinformatics2
usegalaxy.be workflows2
Air Quality Prediction2
Read2Map2
ParslRNA-Seq: an efficient and scalable RNAseq analysis workflow for studies of differentiated gene expression2
KircherLab2
Apis-wings2
BioDT Use Case 4.1.1.2 Ecosystem services2
MISTIC2
BSC-CES2
Black Ochre Data Labs2
Workflows for geographic science2
Katdetectr2
ANSES-Ploufragan2
Pillar III: Urgent computing for natural hazards2
Bioinformatics Laboratory for Genomics and Biodiversity (LBGB)2
CholGen2
Peter Menzel's Team2
Genome Data Compression Team2
RECETOX SpecDatRI2
BioImage Informatics and Analysis Workflows2
NMR Workflow1
COVID-19 PubSeq: Public SARS-CoV-2 Sequence Resource1
Italy-Covid-data-Portal1
EOSC-Life-WP6-Demos1
EOSC-Life WP31
MOLGENIS1
Janis1
IAA-CSIC1
FAME1
CHU Limoges - UF9481 Bioinformatique / CNR Herpesvirus1
HecatombDevelopment1
OpenEBench1
Bioinformatics and Biostatistics (BIO2 ) Core1
VIB Bioinformatics Core1
Single Cell Unit1
emo-bon1
CINECA1
Toxicology community1
Gyn Department1
AGRF BIO1
X-omics1
CAPSID1
Edinburgh Genomics1
NBIS1
BCCM_ULC1
Computational Science at HZDR1
Big data in biomedicine1
Guigó lab1
Statistical genetics1
Delineating Regions-of-interest for Mass Spectrometry Imaging by Multimodally Corroborated Spatial Segmentation1
Bioinformatics Unit @ CRG1
ELIXIR Proteomics1
IRRI Bioinformatics Group1
Zavolan Lab1
Metabolomics-Reproducibility1
NGFF Tools1
Bioinformatics workflows for life science1
Helmholtz Scientific Project Workflow Platform1
BY-COVID Baseline Use Case: SARS-CoV-2 Vaccine(s) effectiveness in preventing SARS-CoV-2 infection1
Lake Erken modelling setup1
EOSC-Life WP3 OC Team, cross RI project1
ARA-dev1
Mendel Centre for Plant Genomics and Proteomics1
WP5 - Volcanoes1
WP6 - Tsunamis1
Metagenomic tools1
Pillar I: Manufacturing1
Polygenic Score Catalog1
MLme: Machine Learning Made Easy1
Dioscuri TDA1
MMV-Lab1
EMBL-CBA1
EBP-Nor1
Evaluation of Swin Transformer and knowledge transfer for denoising of super-resolution structured illumination microscopy data1
Pangenome database project1
HP2NET - Framework for construction of phylogenetic networks on High Performance Computing (HPC) environment1
Building spatio-temporal workflows in Galaxy1
CEMCOF1
Jackson Laboratory NGS-Ops1
BRAIN - Biomedical Research on Adult Intracranial Neoplasms1
Institute for Human Genetics and Genomic Medicine Aachen1
Plant-Food-Research-Open1
WGGC1
ELIXIR Metabolomics1
Medvedeva Lab1
16S rRNA Analysis1
Protein-protein and protein-nucleic acid binding site prediction research1
Culhane Lab1
IDUN - Drug Delivery and Sensing1
ErasmusMC Clinical Bioinformatics1
MAXOMOD1
NkuyfqLab1
bonohulab1
Application Security - Test Crypt4GH solutions1
RenLabBioinformatics1
National Computational Infrastructure (NCI) WorkflowHub team1
Into the deep1
CPM1
Research Data Management ICE-21
LiDAR1
Senckenberg Digital Collection and Biodiversity Information Technologies1
Astroparticle Lab1
QuackenbushLab1
Virus sequencing team1
SOS1
CSUbioinformatics1
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Space
Independent Teams1
Creator
Liang Cheng1
EnrichDO
EnrichDO is a double weighted iterative model by integrating the DO graph topology on a global scale. It was based on the latest annotations of the human genome with DO terms, and double weighted the annotated protein-coding genes. On one hand, to reinforce the saliency of direct gene-DO annotations, different initial weights were assigned to directly annotated genes and indirectly annotated genes, respectively. On the other hand, to detect locally most significant node between ...