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Tool:

Repeat masking - TSI

Australian BioCommons, Galaxy Australia

This is part of a series of workflows to annotate a genome, tagged with TSI-annotation. These workflows are based on command-line code by Luke Silver, converted into Galaxy Australia workflows.

The workflows can be run in this order:

Repeat masking
RNAseq QC and read trimming
Find transcripts
Combine transcripts
Extract transcripts
Convert formats
Fgenesh annotation

Workflow information:

Input = genome.fasta.
Outputs = soft_masked_genome.fasta, hard_masked_genome.fasta, ...

Type: Galaxy

Creators: Luke Silver, Anna Syme

Submitter: Anna Syme

DOI: 10.48546/workflowhub.workflow.875.3

Created: 8th May 2024 at 04:59, Last updated: 20th Jun 2024 at 00:45

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