Workflows
What is a Workflow?Filters
Query
Created At
Updated At
Tag
Bioinformatics2
Alignment1
CWL1
Databases1
Docker1
Genome assembly1
Genomics1
human1
Plant1
protein-structure1
Python1
Snakemake1
More...
Topic annotations
Genetics3
Bioinformatics33
Whole genome sequencing26
Sequence assembly23
Genetic variation18
Genomics18
Transcriptomics16
Metagenomics14
Biodiversity11
Biomedical science11
Ecology11
Computer science10
Population genomics9
Gene expression8
Bioimaging6
Biological databases6
Data mining6
Imaging6
Sequence analysis6
Workflows6
Metagenomic sequencing5
Oncology5
Compound libraries and screening4
Gene transcripts4
Microbiology4
Sequencing4
Copy number variation3
Data quality management3
DNA mutation3
DNA polymorphism3
Drug discovery3
Machine learning3
Preclinical and clinical studies3
Protein interactions3
Proteomics3
Sample collections3
Virology3
Cell biology2
Cheminformatics2
Computational biology2
Computational chemistry2
Data integration and warehousing2
Data submission, annotation and curation2
Data visualisation2
Exome sequencing2
Gene structure2
Infectious disease2
Mapping2
Molecular interactions, pathways and networks2
Pharmacology2
Protein interaction experiment2
Quantitative genetics2
Rare diseases2
Structural variation2
Agricultural science1
ChIP-seq1
Comparative genomics1
DNA packaging1
Environmental science1
Epigenomics1
Function analysis1
Functional genomics1
Human genetics1
Marine biology1
Medical imaging1
Medical informatics1
Medicinal chemistry1
Metabolomics1
Metatranscriptomics1
Microbial ecology1
Molecular genetics1
Nucleic acid sites, features and motifs1
Ontology and terminology1
Pathology1
Phylogenetics1
Phylogenomics1
Physics1
Protein binding sites1
Protein folds and structural domains1
Protein structure analysis1
Protein variants1
Proteins1
Proteomics experiment1
Public health and epidemiology1
Small molecules1
Structural genomics1
Systems biology1
Taxonomy1
More...
Operation annotations
Genetics3
Work-in-progress
plant2human workflow
Stable
HiC contact map generation
Snakemake pipeline for the generation of .pretext and .mcool files for visualisation of HiC contact maps with the softwares PretextView and HiGlass, respectively.
Prerequisites
This pipeine has been tested using Snakemake v7.32.4 and requires conda for installation of required tools. To run the pipline use the command:
snakemake --use-conda
There are provided a set of configuration and running scripts for exectution on a slurm queueing system. After configuring ...
Stable
Galaxy Workflow created on Galaxy-E european instance, ecology.usegalaxy.eu, related to the Galaxy training tutorial "Metabarcoding/eDNA through Obitools" .
This workflow allows to analyze DNA metabarcoding / eDNA data produced on Illumina sequencers using the OBITools.
