Workflows
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Workflow type
Python1
Tag
data annotation1
data fusion1
protein interactin data triplification1
protein interactions database integration1
Submitter
Yasmmin Martins1
Space
Independent Teams1
Topic annotations
Ontology and terminology1
Bioinformatics32
Whole genome sequencing26
Sequence assembly23
Genetic variation18
Genomics18
Transcriptomics15
Metagenomics14
Biodiversity11
Biomedical science11
Ecology11
Computer science10
Population genomics9
Gene expression8
Bioimaging6
Biological databases6
Data mining6
Imaging6
Sequence analysis6
Workflows6
Metagenomic sequencing5
Oncology5
Compound libraries and screening4
Gene transcripts4
Sequencing4
Copy number variation3
Data quality management3
DNA mutation3
DNA polymorphism3
Drug discovery3
Genetics3
Machine learning3
Microbiology3
Preclinical and clinical studies3
Protein interactions3
Proteomics3
Sample collections3
Virology3
Cell biology2
Cheminformatics2
Computational biology2
Data integration and warehousing2
Data visualisation2
Exome sequencing2
Gene structure2
Infectious disease2
Mapping2
Molecular interactions, pathways and networks2
Pharmacology2
Protein interaction experiment2
Quantitative genetics2
Rare diseases2
Structural variation2
Agricultural science1
ChIP-seq1
Computational chemistry1
Data submission, annotation and curation1
DNA packaging1
Environmental science1
Epigenomics1
Function analysis1
Human genetics1
Marine biology1
Medical imaging1
Medical informatics1
Medicinal chemistry1
Metabolomics1
Metatranscriptomics1
Microbial ecology1
Molecular genetics1
Nucleic acid sites, features and motifs1
Pathology1
Phylogenetics1
Phylogenomics1
Physics1
Protein binding sites1
Protein folds and structural domains1
Protein structure analysis1
Protein variants1
Proteins1
Proteomics experiment1
Public health and epidemiology1
Small molecules1
Structural genomics1
Systems biology1
Taxonomy1
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Operation annotations
Ontology and terminology1
Maturity
Stable1
1
Workflow matching the given criteria:
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Topic annotations:
Ontology and terminology1
Stable
Summary
This pipeline has as major goal provide a tool for protein interactions (PPI) prediction data formalization and standardization using the OntoPPI ontology. This pipeline is splitted in two parts: (i) a part to prepare data from three main sources of PPI data (HINT, STRING and PredPrin) and create the standard files to be processed ...