Workflows
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Proteomics label-free quantification (LFQ) analysis pipeline using OpenMS and MSstats, with feature quantification, feature summarization, quality control and group-based statistical analysis.
Type: Nextflow
Creators: Julianus Pfeuffer, Lukas Heumos, Leon Bichmann, Timo Sachsenberg, Yasset Perez-Riverol
Submitter: WorkflowHub Bot
Protein 3D structure prediction pipeline
Type: Nextflow
Creators: Athanasios Baltzis, Jose Espinosa-Carrasco, Harshil Patel
Submitter: WorkflowHub Bot
Proteogenomics database creation workflow using pypgatk framework.
De novo assembly pipeline for 10X linked-reads, used at the SciLifeLab National Genomics Infrastructure.
A comprehensive cancer NGS analysis and reporting pipeline
Nascent Transcription Processing Pipeline
A pipeline to demultiplex, QC and map Nanopore data
MNase-seq analysis pipeline using BWA and DANPOS2.
Identify and quantify peptides from mass spectrometry raw data