Workflows

What is a Workflow?
831 Workflows visible to you, out of a total of 904
Stable

Predict variants and drug resistance from M. tuberculosis sequence samples (Illumina)

Type: Galaxy

Creator: Peter van Heusden

Submitter: Peter van Heusden

Stable

Variant Interpretation Pipeline (VIP) that annotates, filters and reports prioritized causal variants in humans, see https://github.com/molgenis/vip for more information.

Type: Unrecognized workflow type

Creators: None

Submitter: Dennis Hendriksen

A pipeline for ortholog fetching and analysis

Type: Nextflow

Creators: itrujnara , itrujnara

Submitter: WorkflowHub Bot

Nextflow rnafusion analysis pipeline, part of the nf-core community.

Type: Nextflow

Creator: Martin Proks

Submitter: WorkflowHub Bot

Pipeline for the analysis of crispr data

Type: Nextflow

Creators: mirpedrol , mirpedrol , Júlia Mir Pedrol, mirpedrol , mirpedrol , Laurence Kuhlburger

Submitter: WorkflowHub Bot

Stable

Logo

bio.tools Snakemake Deploy Docker image ...

Stable

CNVand

Snakemake Conda Docker License [![Contributor ...

Type: Snakemake

Creator: Carlos Classen

Submitter: Carlos Classen

DOI: 10.48546/workflowhub.workflow.1039.1

Monte Carlo Pi Estimation Program Description

This program is a Monte Carlo simulation designed to estimate the value of Pi using PyCOMPSs.

Tasks in the Program

  1. Count Points in Circle Task (count_points_in_circle):
  • Generates random points within a square with side length 1.
  • Counts points falling within the inscribed circle (x^2 + y^2 <= 1).
  • Input: Number of points to generate (num_points)
  • Output: Tuple containing count of points within the circle and list of generated ...

Type: COMPSs

Creators: Archit Dabral, Under the guidance of Raül Sirvent

Submitter: Archit Dabral

Work-in-progress

Galaxy Workflow Documentation: MS Finder Pipeline

This document outlines a MSFinder Galaxy workflow designed for peak annotation. The workflow consists of several steps aimed at preprocessing MS data, filtering, enhancing, and running MSFinder.

Step 1: Data Collection and Preprocessing

Collect if the inchi and smiles are missing from the dataset, and subsequently filter out the spectra which are missing inchi and smiles.

1.1 MSMetaEnhancer: Collect InChi, Isomeric_smiles, and Nominal_mass

...

Type: Galaxy

Creators: Zargham Ahmad, Helge Hecht, Elliott J. Price, Research Infrastructure RECETOX RI (No LM2018121) financed by the Ministry of Education, Youth and Sports, and Operational Programme Research, Development and Innovation - project CETOCOEN EXCELLENCE (No CZ.02.1.01/0.0/0.0/17_043/0009632).

Submitters: Helge Hecht, Zargham Ahmad

DOI: 10.48546/workflowhub.workflow.888.2

Assembly and intrahost/low-frequency variant calling for viral samples

Type: Nextflow

Creators: Sarai Varona and Sara Monzon, Patel H, Varona S and Monzon S

Submitter: WorkflowHub Bot

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