Workflows

What is a Workflow?
817 Workflows visible to you, out of a total of 891

Proteomics label-free quantification (LFQ) analysis pipeline using OpenMS and MSstats, with feature quantification, feature summarization, quality control and group-based statistical analysis.

Type: Nextflow

Creators: Julianus Pfeuffer, Lukas Heumos, Leon Bichmann, Timo Sachsenberg, Yasset Perez-Riverol

Submitter: WorkflowHub Bot

Protein 3D structure prediction pipeline

Type: Nextflow

Creators: Athanasios Baltzis, Jose Espinosa-Carrasco, Harshil Patel

Submitter: WorkflowHub Bot

Proteogenomics database creation workflow using pypgatk framework.

Type: Nextflow

Creator: Husen M. Umer & Yasset Perez-Riverol

Submitter: WorkflowHub Bot

Deprecated

De novo assembly pipeline for 10X linked-reads, used at the SciLifeLab National Genomics Infrastructure.

Type: Nextflow

Creator: Remi-Andre Olsen (@remiolsen)

Submitter: WorkflowHub Bot

A comprehensive cancer NGS analysis and reporting pipeline

Type: Nextflow

Creator: Stephen Watts

Submitter: WorkflowHub Bot

Nascent Transcription Processing Pipeline

Type: Nextflow

Creators: Ignacio Tripodi, Margaret Gruca

Submitter: WorkflowHub Bot

A pipeline to demultiplex, QC and map Nanopore data

Type: Nextflow

Creator: Chelsea Sawyer

Submitter: WorkflowHub Bot

MNase-seq analysis pipeline using BWA and DANPOS2.

Type: Nextflow

Creator: Harshil Patel

Submitter: WorkflowHub Bot

Identify and quantify peptides from mass spectrometry raw data

Type: Nextflow

Creator: Leon Bichmann

Submitter: WorkflowHub Bot

MARS-seq v2 preprocessing pipeline

Type: Nextflow

Creator: Martin Proks

Submitter: WorkflowHub Bot

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